Spring buds wrote:
Hi
I am trying to average the structure from the last 10ns from 100ns. So I
used the command which is below:
g_rmsf –f 100.xtc –s topol.tpr –b 90001 –e 100000 –ox traj_avg.pdb
But I got below error:
"Program g_rmsf, VERSION 4.5.4
Source code file: /root/Desktop/gromacs-4.5.4/src/gmxlib/trxio.c, line: 713
Fatal error:
Specified frame doesn't exist or file not seekable"
You're specifying a frame that doesn't exist, either 90001 or 100000. Likely
90001 is not an actual time in the trajectory, thus giving rise to the "not
seekable" error.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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