Hi Justin, Thanks for reply. I will look into.
On Fri, Mar 23, 2012 at 10:30 AM, Justin A. Lemkul <[email protected]> wrote: > > > Spring buds wrote: > >> Hi >> >> I am trying to average the structure from the last 10ns from 100ns. So I >> used the command which is below: >> >> g_rmsf –f 100.xtc –s topol.tpr –b 90001 –e 100000 –ox traj_avg.pdb >> >> But I got below error: >> "Program g_rmsf, VERSION 4.5.4 >> Source code file: /root/Desktop/gromacs-4.5.4/**src/gmxlib/trxio.c, >> line: 713 >> >> Fatal error: >> Specified frame doesn't exist or file not seekable" >> >> > You're specifying a frame that doesn't exist, either 90001 or 100000. > Likely 90001 is not an actual time in the trajectory, thus giving rise to > the "not seekable" error. > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
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