HI vineetha,
On Sat, Apr 21, 2012 at 9:32 PM, vineetha mandlik <[email protected]>wrote: > > > > > > Respected Sir/Madam > > I am new to gromacs and on giving the grompp command after genion command > I am getting the following error: > > > > Even after running the genion command and adding 4 Na+ ions before the > grompp command i still get > > Note: the system has non zero charge: -4.99998e+0.0 and then this error.. > > Number of coordinates in coordinate file (x_b4em.gro,24736) does not match > topology (x.top,247535). > > These shows that your co-ordinates not matching with topology file.... So use the -p <file name>.top flag after solvent and ion adiitions, these will prevent such errors > so can you help me in resolving this issue.. > > > Any help in this regard will be highly appreciated. > > > > >
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