On 27/07/2012 2:08 PM, radhika jaswal wrote:
Hi,
Just read,
http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions.
But could not get it.
Please suggest hoe to fix the visual issues with the molecule being broken into
two parts in the final simulation.
There's a suggested workflow on that page. There is no magic way to make
things look how you want that works in all cases, so mdrun makes no
attempt. So thinking and reading and experimenting based on that
workflow are needed.
Mark
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Only plain text messages are allowed!
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
