On 8/17/12 10:41 AM, dariush wrote:
genconf -renumber works well for renumbering. However, after minimization
of that renumbered .gro file, I have previous numbering.
You always will. The numbering is read from the topology, so simulation output
will always be numbered that way and you will have to renumber anything you want
to visualize.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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