Thank you dear Justin! Dariush
On Fri, Aug 17, 2012 at 11:04 AM, Justin Lemkul [via GROMACS] < [email protected]> wrote: > > > On 8/17/12 10:41 AM, dariush wrote: > > genconf -renumber works well for renumbering. However, after > minimization > > of that renumbered .gro file, I have previous numbering. > > > > You always will. The numbering is read from the topology, so simulation > output > will always be numbered that way and you will have to renumber anything > you want > to visualize. > > -Justin > > -- > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [hidden > email]<http://user/SendEmail.jtp?type=node&node=5000298&i=0> > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Only plain text messages are allowed! > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [hidden > email]<http://user/SendEmail.jtp?type=node&node=5000298&i=1>. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > ------------------------------ > If you reply to this email, your message will be added to the discussion > below: > http://gromacs.5086.n6.nabble.com/atom-numbering-tp5000266p5000298.html > To unsubscribe from atom numbering, click > here<http://gromacs.5086.n6.nabble.com/template/NamlServlet.jtp?macro=unsubscribe_by_code&node=5000266&code=ZC5tb2hhbW1hZHlhbmlAZ21haWwuY29tfDUwMDAyNjZ8MTAxNjc4Njk3Ng==> > . > NAML<http://gromacs.5086.n6.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml> > -- View this message in context: http://gromacs.5086.n6.nabble.com/atom-numbering-tp5000266p5000300.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
