Dear Rajeswari, May I ask you why you want to do the multiple protein simulation.?? Please mention the purpose clearly, otherwise it is hard to understand what you are doing and what you need???,
With best wishes and Regards, Rama David On Fri, Nov 2, 2012 at 3:22 PM, Rajeswari A. <[email protected]>wrote: > Dear Gromacs Users, > I want to simulate multiple number of proteins in a box. I am very confused > in choosing what MD method will be useful to solve my problem. Can i do it > with regular molecular dynamics simulations? I am not sure whether > diffusion of solutes are taken care in standard MD. or should i opt > brownian dynamics for this purpose? Is there any special method where i can > do simulate multiple proteins in a box? > > Thank you. > Rajeswari. > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
