On 11/2/12 5:52 AM, Rajeswari A. wrote:
Dear Gromacs Users,
I want to simulate multiple number of proteins in a box. I am very confused
in choosing what MD method will be useful to solve my problem. Can i do it
with regular molecular dynamics simulations? I am not sure whether
diffusion of solutes are taken care in standard MD. or should i opt
brownian dynamics for this purpose? Is there any special method where i can
do simulate multiple proteins in a box?
You can use standard MD methodology. Most of the literature I have seen
involving multiple proteins does.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
