Justin, yes, 2 A for C atoms.
The dims are 8.68740 8.41864 10.00000 James 2013/1/28 Justin Lemkul <[email protected]>: > > > On 1/28/13 8:30 AM, James Starlight wrote: >> >> Justin, >> >> Below you can see graph representation of my system after energy >> minimisation ( that case system was filled up with tip3p water using >> genbox with slightly increased vdw for C atom ( to 2nm) to prevent > > > I'm assuming you mean 2 Angstrom? > > >> water movement into the membrane. >> >> http://img42.imageshack.us/img42/7213/b2armembrane.png >> > > I can't exactly guess what the dimensions of the system are, but it seems to > me that the z-dimension is not 10 nm based on a rough guess of how many > lipids are present. > > > -Justin > > -- > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
