On 15.05.2013 06:41, Андрей Гончар wrote:
I know, but on target machine there is a gcc compilator version 4.1, and on
gromacs site they told that this version is broken and 4.5 should used
instead. So I try to compile it on machine with 4.5 version of gcc
Андрей, if there is *no fftw3f on the target machine* and
if it's an old system which will run its old system until
thrown out, then you could do the /'tough admin'/ solution.
Contact the admin/root of the target machine and let him copy
the files that show up after:
$> cd /usr
$> du -a | grep lib64/libfftw3
to the same location (/usr/lib64) on the target machine. This
will most probably work fine (I did so in many cases).
Another variant: Put these files into your user directory
on the target machine (/home/andrey/fftw3) and point
LD_LIBRARY_PATH to this directory by issuing (bash):
$> LD_LIBRARY_PATH=/home/andrey/fftw3:$LD_LIBRARY_PATH mdrun -v
Regards,
M.
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