I was not sure about the fucntion type (1 or 2). Once in manual it is stated that function 1 is only for exclusions and another time it can be used to miimc bonds. Both functions are working though. Thanks anyway.
Steven On Tue, Jun 11, 2013 at 2:18 PM, Dr. Vitaly Chaban <[email protected]>wrote: > I think all is correct. > > Why are you asking? People normally report problems. > > Dr. Vitaly Chaban > > > > > > > On Tue, Jun 11, 2013 at 12:30 PM, Steven Neumann <[email protected] > >wrote: > > > Dear Gmx Users, > > > > I am running CG simulation and I wish my beads to be constraint - one > away > > from each other of 0.4 nm. I wan to use Lincs for this purpose. I do not > > have any bonds in my topology or rtp entry. I just add: > > > > [ constraints ] > > 1 2 1 0.4 > > 2 3 1 0.4 > > ... > > 31 32 1 0.4 > > > > constraints = none > > constraint_algorithm = Lincs > > > > > > Is that correct? I used function 1, is that right? > > > > Shall I specify something else? > > > > > > Steven > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
