Steven - I probably know nothing about "function #2", but "function 1" is used just everywhere. It does constrain intramolecular distances.
Good luck. Vitaly Dr. Vitaly Chaban On Tue, Jun 11, 2013 at 4:46 PM, Steven Neumann <s.neuman...@gmail.com>wrote: > I was not sure about the fucntion type (1 or 2). Once in manual it is > stated that function 1 is only for exclusions and another time it can be > used to miimc bonds. Both functions are working though. Thanks anyway. > > Steven > > > On Tue, Jun 11, 2013 at 2:18 PM, Dr. Vitaly Chaban <vvcha...@gmail.com>wrote: > >> I think all is correct. >> >> Why are you asking? People normally report problems. >> >> Dr. Vitaly Chaban >> >> >> >> >> >> >> On Tue, Jun 11, 2013 at 12:30 PM, Steven Neumann <s.neuman...@gmail.com >> >wrote: >> >> > Dear Gmx Users, >> > >> > I am running CG simulation and I wish my beads to be constraint - one >> away >> > from each other of 0.4 nm. I wan to use Lincs for this purpose. I do not >> > have any bonds in my topology or rtp entry. I just add: >> > >> > [ constraints ] >> > 1 2 1 0.4 >> > 2 3 1 0.4 >> > ... >> > 31 32 1 0.4 >> > >> > constraints = none >> > constraint_algorithm = Lincs >> > >> > >> > Is that correct? I used function 1, is that right? >> > >> > Shall I specify something else? >> > >> > >> > Steven >> > -- >> > gmx-users mailing list gmx-users@gromacs.org >> > http://lists.gromacs.org/mailman/listinfo/gmx-users >> > * Please search the archive at >> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> > * Please don't post (un)subscribe requests to the list. Use the >> > www interface or send it to gmx-users-requ...@gromacs.org. >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists