I am having this issue too. I also noticed that it lost the domain mapping, even though it still works! (My app is http://go.chaz6.com/ - which due to hsts preload will not work in chrome, you will have to use another browser until the ssl situation gets sorted out). It would be useful if there was a page that listed all the custom aliases for my domains that have been assigned to apps (gmail, docs, appengine, etc).
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