Please excuse the delay; I'm catching up from travel last week.
current agenda proposal, also available in gpc-dev 30 June
meeting<https://docs.google.com/document/d/1jgc5WVkaa1YVBU4KOUEFzp3zKD08aGha4o-0oI7jU9w/edit>
google doc:
________________________________
1. Convene, take roll, review records and plan next meeting
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 10(12)
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU),
(IU)
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: Laurel @ MCRF. comments on the agenda? on last week’s
notes (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)?
recent tickets opened/closed FYI (note also recent ticket comments
report<https://informatics.gpcnetwork.org/trac/Project/report/13>):
* #265 (QA ER/PR status and other Breast Cancer data elements)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/265#comment:11>
* Next Meeting: July 7 scribe volunteer?
2.
milestone:obesity-survey-def<https://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def>
- demo?
* #254, #250 - obesity query on babel?
* #253<https://informatics.gpcnetwork.org/trac/Project/ticket/253>
obesity survey REDCap tracker and
tools<https://informatics.gpcnetwork.org/trac/Project/ticket/253>
* Angela to revise
REDCap_DataDictionary.csv<https://bitbucket.org/bos_uthscsa/survey_tracker/src/9f11111d6c95d71524837e3c43e71d05c4d65510/REDCap_DataDictionary.csv?at=default>
- done:
2939256<https://bitbucket.org/bos_uthscsa/survey_tracker/src/2939256f80d5/REDCap_DataDictionary.csv>
* Hubert/UNMC to try out Angela’s Tracker
3. Milestone: adaptable-accrual:
#276<https://informatics.gpcnetwork.org/trac/Project/ticket/276> governance
lacking for ADAPTABLE prep-to-research
queries<https://informatics.gpcnetwork.org/trac/Project/ticket/276>
4. milestone:data-sec-check
* #79 - PCORnet policies were ratified June 22:
* (Threshold) Minimum count thresholds for Aggregate Data;
* (Perturb) Perturbation of PCORnet Data;
* (Obfuscate) Obfuscation of identifiers for record linkage; and
* (De-identify) De-identification of record-level research
participant information.
* #80<https://informatics.gpcnetwork.org/trac/Project/ticket/80>
assessment of GPC vs. data privacy and security
standards<https://informatics.gpcnetwork.org/trac/Project/ticket/80> -
responses<https://redcap.gpcnetwork.org/redcap_v6.2.2/DataExport/index.php?pid=24&report_id=11>
to survey<https://redcap.gpcnetwork.org/surveys/?s=LDXPJHWWNL> was missing CMH
PCORnet policies don’t seem to address risk assessments etc. We’re good on
de-identification
(#73<https://informatics.gpcnetwork.org/trac/Project/ticket/73>) and we’ll take
care to be good on obfuscation
(#133<https://informatics.gpcnetwork.org/trac/Project/ticket/133>). Threshold
and Perturb seem less relevant. Write-up for milestones 3.09, 3.10, 3.11, and
3.12 looks straightforward.
5. milestone:cohort-char1
* #298<https://informatics.gpcnetwork.org/trac/Project/ticket/298>
breast cancer correspondence between EHR and tumor registry
variables<https://informatics.gpcnetwork.org/trac/Project/ticket/298> (see
depgraph)
6. milestone
survey-redcap-als<https://informatics.gpcnetwork.org/trac/Project/milestone/survey-redcap-als>:
#284 - Mark / MCW? Supreet / UMN? UNMC?
7. I2B2 AUG<https://www.i2b2.org/work/aug.html> in Boston 23 Jun
* #109, #191<https://informatics.gpcnetwork.org/trac/Project/ticket/191>
SCILHS i2b2 PCORnet Common Data Model Ontology
Home<https://community.i2b2.org/wiki/display/SCILHS/SCILHS+i2b2+PCORnet+Common+Data+Model+Ontology+Home>
* #155 correlating observations with
encounters<https://informatics.gpcnetwork.org/trac/Project/ticket/155> - no
news, other than the above
* i2b2 meds to CDM v3 - they’re working on it; ETA “next few months”
8. #240<https://informatics.gpcnetwork.org/trac/Project/ticket/240> Data
Characterization queries for phase 1 CDM V1
compliance<https://informatics.gpcnetwork.org/trac/Project/ticket/240>: lead
site? UNMC?
9. milestone:data-quality-q2
* #291 Gather 2015 2nd quarterly QA
numbers<https://informatics.gpcnetwork.org/trac/Project/ticket/291> - “First
draft of QA code covering ... should be available on Bit Bucket at the end of
this week.” -- Mish Jun 8
<https://informatics.gpcnetwork.org/trac/Project/ticket/291#comment:5>Tom: Will
create the new bitbucket today or tomorrow.
* #293 Report SAS and RDBMS version and packages to
DSSNI<https://informatics.gpcnetwork.org/trac/Project/ticket/293>
10.
milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3>
* #199<https://informatics.gpcnetwork.org/trac/Project/ticket/199>
representing Medication workflows:
modifiers<https://informatics.gpcnetwork.org/trac/Project/ticket/199>:
Hickman/UNMC to share ETL code via Epic’s site. (done)
PR: OK, I’ll take a look when you post the surescripts extract, Jim
11.
milestone:bc-survey-cohort-def<https://informatics.gpcnetwork.org/trac/Project/milestone/bc-survey-cohort-def>
* #227<https://informatics.gpcnetwork.org/trac/Project/ticket/227> Data
QA for Breast Cancer Finder File - lists validated? study ids in hand?
________________________________
--
Dan
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