What else for tomorrow?
* gpc-dev 17 May shared
notes<https://docs.google.com/document/d/1w8z5IwxWqjBl3KVPZuw1sme0H2UCrJBHrdOBOXEkg54/edit>;
scribe: MCW
current proposal:
________________________________
1. Convene, take roll, review records and plan next meeting
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: MCW
* reminders from current work by owner
site<https://informatics.gpcnetwork.org/trac/Project/report/11>: None
* comments on the agenda? on last week’s notes
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)?
* recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> FYI
(note also recent ticket comments
report<https://informatics.gpcnetwork.org/trac/Project/report/13>):
* #506 (build MCW CDM from i2b2 via SCILHS i2p-transform)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/506>
* Next Meeting: 24 May; scribe?
* Note LRU
schedule<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>,
which nominates IU, MCRF, …
2.
Milestone:gpc2sites<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc2sites>
due 16 May
* #443<https://informatics.gpcnetwork.org/trac/Project/ticket/443> IU /
Regenstrief Cancer Tumor Registry on
babel<https://informatics.gpcnetwork.org/trac/Project/ticket/443> - what news?
* #494<https://informatics.gpcnetwork.org/trac/Project/ticket/494> CMH
cancer tumor registry on babel
<https://informatics.gpcnetwork.org/trac/Project/ticket/494>Note Comment:4 11
May update
CMH meeting with Russ Thu 1pm
3.
Milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3>
CDM v3 prep-to-research readiness
* #473<https://informatics.gpcnetwork.org/trac/Project/ticket/473>
PCORnet CDMv3 SAS prep-to-research Readiness
<https://informatics.gpcnetwork.org/trac/Project/ticket/473>All sites other
than KUMC, MCRF, and MCW must complete the Data Characterization Questions and
Answers …
The response is due to DRN OC by Friday, May 20; however, a draft needs to be
sent to KUMC (Russ Waitman, Michael Prittie, Nathan Graham, and Dan Connolly)
by end of day Friday, May 13.
Can’t find draft from UIOWA.
* #507 (how to determine "dramatic change in the trendlines of
encounters" in CDM
...)<https://informatics.gpcnetwork.org/trac/Project/ticket/507#comment:4>
opened, closed
A site will be flagged with "instability over time" if record counts fluctuate
by two standard deviations on the EDC graphs.
4.
Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d>
* #509 (geocoding ETL code: establish shared version control
repository)<https://informatics.gpcnetwork.org/trac/Project/ticket/509>
* #508 (Handling small geographic areas in geocoded data for
Next-D)<https://informatics.gpcnetwork.org/trac/Project/ticket/508>
5.
Milestone:antibiotic-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/antibiotic-study-data>,
milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data>
* #285<https://informatics.gpcnetwork.org/trac/Project/ticket/285> HbA1c
and other laboratory data: data quality check, CDM ETL
<https://informatics.gpcnetwork.org/trac/Project/ticket/285>Pull request
LAB_RESULT_CM transform #32<https://github.com/kumc-bmi/i2p-transform/pull/32>
is available
Which encounters should have HbA1c tests?
* Bariatric technical specs, functional specs: next steps?
<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002875.html>Discuss next
week?
* Obesity Studies Query Process and
Timeline<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002877.html> Dan
Connolly
Covered by existing tickets?
* #492<https://informatics.gpcnetwork.org/trac/Project/ticket/492> How
to Build SAS CDM v3 Medication
Tables<https://informatics.gpcnetwork.org/trac/Project/ticket/492> - overtaken
(e.g. #496<https://informatics.gpcnetwork.org/trac/Project/ticket/496> for
KUMC)? Or still worth tracking?
6.
Milestone:adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual>
* GPC Feasibility Query:
ADAPTABLE<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002767.html>
Tamara McMahon
Due by Friday 4/29
Responses<https://redcap.gpcnetwork.org/redcap_v6.11.5/DataExport/index.php?pid=48&report_id=67>
as of this writing: IU, MCRF, MCW, UIOWA, UNMC, UTHSCSA, KUMC, MU
Pending: UTSW (resolving issues)
* 3 May: Teresa to check with Phillip on UTSW status.
7.
Milestone:cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>
* UIOWA: #505 (share DataBuilder work-alike in use at UIOWA)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/505> from 12
Apr; due 30 May
(cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>)
* #474<https://informatics.gpcnetwork.org/trac/Project/ticket/474>
DataBuilder at MCW<https://informatics.gpcnetwork.org/trac/Project/ticket/474>
- last update 11 Apr; due 30 May
(cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>)
* #487<https://informatics.gpcnetwork.org/trac/Project/ticket/487> UTSW
HMRFS (obesity) survey data pending input from Children's
Hospital<https://informatics.gpcnetwork.org/trac/Project/ticket/487> - last
update 12 Apr; due 30 May
(cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>)
8.
Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db>
* #169<https://informatics.gpcnetwork.org/trac/Project/ticket/169> MCW
cancer tumor registry counts not available on GPC term sharing service
(Babel)<https://informatics.gpcnetwork.org/trac/Project/ticket/169> update
since Jan 27
HackathonThree<https://informatics.gpcnetwork.org/trac/Project/wiki/HackathonThree>?
* #448<https://informatics.gpcnetwork.org/trac/Project/ticket/448> all
diagnoses and procedures for breast cancer cohort
<https://informatics.gpcnetwork.org/trac/Project/ticket/448>Seems to work well
at KUMC; Recruit another site to try it.
9. #377 (Distribute Social Security Death Master file to sites) reopened by
jay.pedersen<https://informatics.gpcnetwork.org/trac/Project/ticket/377#comment:26>
10. FW: 2016 i2b2 AUG-SHRINE meeting (June
21)<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002861.html> Dan
Connolly
________________________________
--
Dan
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