RE: Gpc-dev Digest, Vol 28, Issue 25

[Manuel, Laura S M]

UTHSCSA submitted this morning. 6-24-2016

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Subject: Gpc-dev Digest, Vol 28, Issue 25

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Today's Topics:

   1. Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
      prep-to-research  Readiness (GPC Informatics)
   2. Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
      prep-to-research  Readiness (GPC Informatics)
   3. Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
      prep-to-research  Readiness (GPC Informatics)
   4. Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
      prep-to-research  Readiness (GPC Informatics)
   5. Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
      prep-to-research  Readiness (GPC Informatics)
   6. UNMC Breast Cancer cohort consented patients -- how to send
      CDMV3     info for procedures,etc? (Pedersen, Jay G)
   7. RE: UNMC Breast Cancer cohort consented patients -- how to
      send      CDMV3 info for procedures,etc? (Verhagen, Laurel A)


----------------------------------------------------------------------

Message: 1
Date: Fri, 24 Jun 2016 13:36:54 +0000
From: "GPC Informatics" <d...@madmode.com>
To: verhagen.lau...@mcrf.mfldclin.edu, prakash-nadka...@uiowa.edu,
        jd...@umn.edu, dconno...@kumc.edu, b...@uthscsa.edu, ngra...@kumc.edu,
        mprit...@kumc.edu, nate.apa...@cerner.com, bzscho...@kumc.edu,
        mo...@health.missouri.edu, campb...@unmc.edu, kwa...@uwhealth.org,
        ashok.mudgapa...@unmc.edu, jmcc...@unmc.edu, m...@wisc.edu,
        jay.peder...@unmc.edu, adfre...@regenstrief.org, wcteach...@cmh.edu,
        bo...@uthscsa.edu, danh...@regenstrief.org, nicholas-c-sm...@uiowa.edu
Cc: darcy.lou...@duke.edu, gpc-dev@listserv.kumc.edu,
        tachina...@wisc.edu
Subject: Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
        prep-to-research        Readiness
Message-ID:
        
<0100015582a0a3ec-4859fbaf-cdb8-45d9-9fdc-27b409fcdac7-000...@email.amazonses.com>
        
Content-Type: text/plain; charset="utf-8"

#473: PCORnet CDMv3 SAS prep-to-research Readiness
-------------------------+------------------------------
 Reporter:  lv           |       Owner:  prakashnadkarni
     Type:  enhancement  |      Status:  assigned
 Priority:  major        |   Milestone:  data-domains3
Component:  data-stds    |  Resolution:
 Keywords:               |  Blocked By:  381, 486
 Blocking:  510          |
-------------------------+------------------------------
Changes (by lv):

 * owner:  lv => prakashnadkarni


Comment:

 No issues were reported as of 6/21 with completing the DCQ/ETL ADD  submission 
to DRN OC for 6/24 (TODAY)

 Looking for confirmation of submission from Group 1C and 2 sites:

 CMH - submitted 6/17
 UIOWA -
 UMN -
 UNMC -
 UTHSCSA -
 UTSW -
 WISC -

--
Ticket URL: 
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:88>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics


------------------------------

Message: 2
Date: Fri, 24 Jun 2016 13:47:17 +0000
From: "GPC Informatics" <d...@madmode.com>
To: verhagen.lau...@mcrf.mfldclin.edu, prakash-nadka...@uiowa.edu,
        jd...@umn.edu, dconno...@kumc.edu, b...@uthscsa.edu, ngra...@kumc.edu,
        mprit...@kumc.edu, nate.apa...@cerner.com, bzscho...@kumc.edu,
        mo...@health.missouri.edu, campb...@unmc.edu, kwa...@uwhealth.org,
        ashok.mudgapa...@unmc.edu, jmcc...@unmc.edu, m...@wisc.edu,
        jay.peder...@unmc.edu, adfre...@regenstrief.org, wcteach...@cmh.edu,
        bo...@uthscsa.edu, danh...@regenstrief.org, nicholas-c-sm...@uiowa.edu
Cc: darcy.lou...@duke.edu, gpc-dev@listserv.kumc.edu,
        tachina...@wisc.edu
Subject: Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
        prep-to-research        Readiness
Message-ID:
        
<0100015582aa282c-b8e30e58-7a11-4b9b-aa68-7bc1dcf3f9f6-000...@email.amazonses.com>
        
Content-Type: text/plain; charset="utf-8"

#473: PCORnet CDMv3 SAS prep-to-research Readiness
-------------------------+------------------------------
 Reporter:  lv           |       Owner:  prakashnadkarni
     Type:  enhancement  |      Status:  assigned
 Priority:  major        |   Milestone:  data-domains3
Component:  data-stds    |  Resolution:
 Keywords:               |  Blocked By:  381, 486
 Blocking:  510          |
-------------------------+------------------------------

Comment (by dhood):

 IU has rerun the query as we have addressed the data model conformance  issue 
that was identified during our last submission.  Unfortunately, we  are still 
lacking with regard to availability of encounter-procedure data.
 We would like to submit our query and ETL ADD to show progress, however  
PCORnet cancelled their request for our query on 6/17.  At this time we  are 
unable to reply to the query as the upload button is greyed out.

--
Ticket URL: 
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:89>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics


------------------------------

Message: 3
Date: Fri, 24 Jun 2016 13:49:09 +0000
From: "GPC Informatics" <d...@madmode.com>
To: verhagen.lau...@mcrf.mfldclin.edu, prakash-nadka...@uiowa.edu,
        jd...@umn.edu, dconno...@kumc.edu, b...@uthscsa.edu, ngra...@kumc.edu,
        mprit...@kumc.edu, nate.apa...@cerner.com, bzscho...@kumc.edu,
        mo...@health.missouri.edu, campb...@unmc.edu, kwa...@uwhealth.org,
        ashok.mudgapa...@unmc.edu, jmcc...@unmc.edu, m...@wisc.edu,
        jay.peder...@unmc.edu, adfre...@regenstrief.org, wcteach...@cmh.edu,
        bo...@uthscsa.edu, danh...@regenstrief.org, nicholas-c-sm...@uiowa.edu
Cc: darcy.lou...@duke.edu, gpc-dev@listserv.kumc.edu,
        tachina...@wisc.edu
Subject: Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
        prep-to-research        Readiness
Message-ID:
        
<0100015582abdcfc-f9ba35d2-6453-40c3-878c-ac579049bebc-000...@email.amazonses.com>
        
Content-Type: text/plain; charset="utf-8"

#473: PCORnet CDMv3 SAS prep-to-research Readiness
-------------------------+------------------------------
 Reporter:  lv           |       Owner:  prakashnadkarni
     Type:  enhancement  |      Status:  assigned
 Priority:  major        |   Milestone:  data-domains3
Component:  data-stds    |  Resolution:
 Keywords:               |  Blocked By:  381, 486
 Blocking:  510          |
-------------------------+------------------------------

Comment (by lv):

 Thanks, Dan! I'll see if we can get one to you ASAP.

--
Ticket URL: 
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:90>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics


------------------------------

Message: 4
Date: Fri, 24 Jun 2016 14:26:49 +0000
From: "GPC Informatics" <d...@madmode.com>
To: verhagen.lau...@mcrf.mfldclin.edu, jd...@umn.edu,
        dconno...@kumc.edu,     b...@uthscsa.edu, ngra...@kumc.edu,
        mprit...@kumc.edu,      nate.apa...@cerner.com, bzscho...@kumc.edu,
        mo...@health.missouri.edu,      campb...@unmc.edu, kwa...@uwhealth.org,
        ashok.mudgapa...@unmc.edu,      jmcc...@unmc.edu, m...@wisc.edu,
        jay.peder...@unmc.edu,  adfre...@regenstrief.org,
        prakash-nadka...@uiowa.edu, wcteach...@cmh.edu, bo...@uthscsa.edu,
        danh...@regenstrief.org, nicholas-c-sm...@uiowa.edu
Cc: darcy.lou...@duke.edu, gpc-dev@listserv.kumc.edu,
        tachina...@wisc.edu
Subject: Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
        prep-to-research        Readiness
Message-ID:
        
<0100015582ce5843-0307df22-8c34-4354-8cbe-d982f4ad9982-000...@email.amazonses.com>
        
Content-Type: text/plain; charset="utf-8"

#473: PCORnet CDMv3 SAS prep-to-research Readiness
-------------------------+----------------------------
 Reporter:  lv           |       Owner:  jdale
     Type:  enhancement  |      Status:  assigned
 Priority:  major        |   Milestone:  data-domains3
Component:  data-stds    |  Resolution:
 Keywords:               |  Blocked By:  381, 486
 Blocking:  510          |
-------------------------+----------------------------
Changes (by lv):

 * owner:  prakashnadkarni => jdale


--
Ticket URL: 
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:91>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics


------------------------------

Message: 5
Date: Fri, 24 Jun 2016 15:15:19 +0000
From: "GPC Informatics" <d...@madmode.com>
To: verhagen.lau...@mcrf.mfldclin.edu, jay.peder...@unmc.edu,
        jd...@umn.edu,  dconno...@kumc.edu, b...@uthscsa.edu, ngra...@kumc.edu,
        mprit...@kumc.edu,      nate.apa...@cerner.com, bzscho...@kumc.edu,
        mo...@health.missouri.edu,      campb...@unmc.edu, kwa...@uwhealth.org,
        ashok.mudgapa...@unmc.edu,      jmcc...@unmc.edu, m...@wisc.edu,
        adfre...@regenstrief.org,       prakash-nadka...@uiowa.edu,
        wcteach...@cmh.edu, bo...@uthscsa.edu,  danh...@regenstrief.org,
        nicholas-c-sm...@uiowa.edu
Cc: darcy.lou...@duke.edu, gpc-dev@listserv.kumc.edu,
        tachina...@wisc.edu
Subject: Re: [gpc-informatics] #473: PCORnet CDMv3 SAS
        prep-to-research        Readiness
Message-ID:
        
<0100015582fabe98-75fafb85-5e51-463e-b219-d15ddb6ccad9-000...@email.amazonses.com>
        
Content-Type: text/plain; charset="utf-8"

#473: PCORnet CDMv3 SAS prep-to-research Readiness
-------------------------+----------------------------
 Reporter:  lv           |       Owner:  jay.pedersen
     Type:  enhancement  |      Status:  assigned
 Priority:  major        |   Milestone:  data-domains3
Component:  data-stds    |  Resolution:
 Keywords:               |  Blocked By:  381, 486
 Blocking:  510          |
-------------------------+----------------------------
Changes (by jdale):

 * owner:  jdale => jay.pedersen


--
Ticket URL: 
<http://informatics.gpcnetwork.org/trac/Project/ticket/473#comment:92>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics


------------------------------

Message: 6
Date: Fri, 24 Jun 2016 16:19:19 +0000
From: "Pedersen, Jay G" <jay.peder...@unmc.edu>
To: "gpc-dev@listserv.kumc.edu" <gpc-dev@listserv.kumc.edu>
Subject: UNMC Breast Cancer cohort consented patients -- how to send
        CDMV3   info for procedures,etc?
Message-ID:
        <87f3538507193a44a518dbed72c47141b3b...@unmcex1.unmcresforest.org>
Content-Type: text/plain; charset="iso-8859-1"

Hi,

I need a bit of direction.

Per the GPC meeting discussion on obtaining information on 
procedures,conditions,diagnoses from the CDMV3 table for consented patients in 
the breast cancer cohort ...

UNMC personnel have extracted this information into an Excel spreadsheet with 3 
sheets for procedures, conditions, diagnoses.  However, I am uncertain of the 
format that is being requested (is an xlsx spreadsheet file good enough?) and 
how to go about submitting the information.  The only thing I know is that it 
is to be sent to Betsy, and I am not sure how to go about that.

Can anyone point me to appropriate information?  I have not found the 
information in ticket #448.

Jay Pedersen, M.A.
Department of Pathology/Microbiology
University of Nebraska Medical Center
985900 Nebraska Medical Center
Omaha NE  68198-5900
402-559-9487<tel:402-559-9593> (office)
402-739-3496<tel:402-350-7851> (mobile)

The information in this e-mail may be privileged and confidential, intended 
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Message: 7
Date: Fri, 24 Jun 2016 16:34:38 +0000
From: "Verhagen, Laurel A" <verhagen.lau...@mcrf.mfldclin.edu>
To: "Pedersen, Jay G" <jay.peder...@unmc.edu>,
        "gpc-dev@listserv.kumc.edu"     <gpc-dev@listserv.kumc.edu>
Subject: RE: UNMC Breast Cancer cohort consented patients -- how to
        send    CDMV3 info for procedures,etc?
Message-ID:
        <b3a09694f9a60a4ab837842181c6953c55bf5...@mcl-exmb04.mfldclin.org>
Content-Type: text/plain; charset="us-ascii"

Hi Jay,

Ticket #448, comment 
30<https://informatics.gpcnetwork.org/trac/Project/ticket/448#comment:30> 
includes a link to the survey for submitting your 
data<*?survey:%20diagnoses%20and%20procedures%20for%20consented%20Breast%20Cancer%20Study%20patients>.
 I found most of the specifics on the REDCap survey. For Marshfield, I created 
a zip file with two csvs - one for diagnoses and one for procedures.

If these have been reviewed or require revision, I haven't heard it yet...

Thanks,
Laurel

From: gpc-dev-boun...@listserv.kumc.edu 
[mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Pedersen, Jay G
Sent: Friday, June 24, 2016 11:19 AM
To: gpc-dev@listserv.kumc.edu
Subject: UNMC Breast Cancer cohort consented patients -- how to send CDMV3 info 
for procedures,etc?

Hi,

I need a bit of direction.

Per the GPC meeting discussion on obtaining information on 
procedures,conditions,diagnoses from the CDMV3 table for consented patients in 
the breast cancer cohort ...

UNMC personnel have extracted this information into an Excel spreadsheet with 3 
sheets for procedures, conditions, diagnoses.  However, I am uncertain of the 
format that is being requested (is an xlsx spreadsheet file good enough?) and 
how to go about submitting the information.  The only thing I know is that it 
is to be sent to Betsy, and I am not sure how to go about that.

Can anyone point me to appropriate information?  I have not found the 
information in ticket #448.

Jay Pedersen, M.A.
Department of Pathology/Microbiology
University of Nebraska Medical Center
985900 Nebraska Medical Center
Omaha NE  68198-5900
402-559-9487<tel:402-559-9593> (office)
402-739-3496<tel:402-350-7851> (mobile)

The information in this e-mail may be privileged and confidential, intended 
only for the use of the addressee(s) above. Any unauthorized use or disclosure 
of this information is prohibited. If you have received this e-mail by mistake, 
please delete it and immediately contact the sender.

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