Jim, Thanks for your expertise! Is it possible to share the LOINC codes used at UNMC for this request?
Laurel From: Campbell, James R [mailto:[email protected]] Sent: Wednesday, July 06, 2016 12:01 PM To: Verhagen, Laurel A Cc: Sravani Chandaka ([email protected]); Tamara McMahon; [email protected] Subject: Re: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Laurel The LOINC parts code (LP14672-2) is only valid as a defining 'atom' in LOINC and should be ignored for retrieving valid IgG levels from your lab data. I assume this was a simple misinterpretation of the meaning of the LOINC part. Jim James R. Campbell MD [email protected]<mailto:[email protected]> Office: 402-559-7505 Secretary: 402-559-7299 Pager: 402-888-1230 On Jul 5, 2016, at 4:24 PM, Verhagen, Laurel A <[email protected]<mailto:[email protected]>> wrote: Hi Sravani and Tamara, I’m wondering if one of you can help answer a question related to the PI CONNECT query. The Cohort definition doesn’t specify coding for the IgG levels. Marshfield doesn’t populate LP14672-7, which is used in the sample query on babel. Is it appropriate to substitute another test? If so, does the PI want to provide a list of approved codes or can this be localized without PI involvement? I do have data for LOINC 2465-3<https://urldefense.proofpoint.com/v2/url?u=http-3A__s.details.loinc.org_LOINC_2465-2D3.html-3Fsections-3DComprehensive&d=CwMGaQ&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=K46w4rQwaUJuGxCIYEtVubiGOtWo53CRIGSeaPr-Ftw&s=ocg6T0ZpCjvNLbTsVKIRadFm-9n4_0LyZyDIiRV_36Q&e=> IgG [Mass/volume] in Serum or Plasma, as well as several panels that contain the component: MEMBER OF THESE PANELS 34550-4 Immunoglobulin panel [Mass/volume] - Serum 47289-4 IgG and IgG subclass panel [Mass/volume] - Serum 55121-8 Multiple sclerosis panel - Serum and CSF 55295-0 Protein electrophoresis and Immunoglobulins panel - Serum We also have a couple of CPT codes that might be relevant – 82784, 82787. Looking for guidance on how to proceed—or whether Marshfield would be out, because we’re missing LP14672-7. Thanks, Laurel From: [email protected]<mailto:[email protected]> [mailto:[email protected]] On Behalf Of Tamara McMahon Sent: Friday, June 17, 2016 1:54 PM To: [email protected]<mailto:[email protected]>; [email protected]<mailto:[email protected]> Subject: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection All, The GPC received a de-identified data request from Dr. Kate Sullivan of the PI-CONNECT PPRN. This query contains labs and diagnosis (ICD-9 codes). The query is located on Babel at Shared\PI-Connect\PIConnect[6-17-2016]. Attached is a description of the search and output criteria. The stratification does not need to be included in the query. Data files should be created using the data builder. You can read about the data builder output and how it is made<https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_wiki_BuilderSaga-23builder-2Dsql-2Dguide&d=CwMFAg&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=1s3q4ZJyND4-iDjqR8VdH3Q5iMWtjrMQmY0D8x20n1A&s=g2vp7MaK6nOY0kvXVBsVaiC0zWtpZ5XEPpL6CVHAqFc&e=> and about the data summary<https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_wiki_BuilderSaga-23DataSummary&d=CwMFAg&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=1s3q4ZJyND4-iDjqR8VdH3Q5iMWtjrMQmY0D8x20n1A&s=coDOqgi-3PrCK_xu38j5D9EZvZtg0VNiIOIXpPSWtHs&e=>. Submit the data via this survey<https://urldefense.proofpoint.com/v2/url?u=https-3A__redcap.gpcnetwork.org_surveys_-3Fs-3DN9MEMP84HX&d=CwMFAg&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=1s3q4ZJyND4-iDjqR8VdH3Q5iMWtjrMQmY0D8x20n1A&s=mzY4n_a86rCyjUkVkfh3f5FJPAe4HS3OY3KfQOQf83Q&e=>. Note: I am unavailable next week but will be on the GPC-Dev call 6/28 to discuss any questions about this query or data request. The following institutions have DROC approval and can submit their data at any time. KUMC Indiana Iowa MCW Marshfield Missouri Nebraska UTHSC-SA The following sites do not have DROC approval yet. Please do not submit until approval is in place for your institution. Minnesota UTSW Wisconsin The following sites are not required to run the query. CMH Each site that provides data will be reimbursed $500. Regards, Tamara McMahon Director, Engineering & Product Experience Medical Informatics, University of Kansas Medical Center ________________________________ The contents of this message may contain private, protected and/or privileged information. If you received this message in error, you should destroy the e-mail message and any attachments or copies, and you are prohibited from retaining, distributing, disclosing or using any information contained within. Please contact the sender and advise of the erroneous delivery by return e-mail or telephone. 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