That is a good point, but she specified ICD-9 values only. Originally she had a date limit ending in 2014 but removed it in the off chance there are recording ICD9s after 2014.
From: Campbell, James R [mailto:[email protected]] Sent: Thursday, July 07, 2016 2:46 PM To: Tamara McMahon <[email protected]> Cc: Phillip Reeder <[email protected]>; Verhagen, Laurel A <[email protected]>; Campbell, Walter S <[email protected]>; [email protected] Subject: Re: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Understood. However Phillip has a good point in that that means that no diagnosis data after October 1, 2014 will be retrieved since they were deinstalled at that time. Jim James R. Campbell MD [email protected]<mailto:[email protected]> Office: 402-559-7505 Secretary: 402-559-7299 Pager: 402-888-1230 On Jul 7, 2016, at 2:40 PM, Tamara McMahon <[email protected]<mailto:[email protected]>> wrote: Dr. Sullivan only specified the ICD9 codes. Do not worry about the ICD10 codes for this query. Tamara From: Phillip Reeder [mailto:[email protected]] Sent: Thursday, July 07, 2016 1:31 PM To: Tamara McMahon <[email protected]<mailto:[email protected]>>; 'Verhagen, Laurel A' <[email protected]<mailto:[email protected]>>; Campbell, Walter S <[email protected]<mailto:[email protected]>>; Campbell, James R <[email protected]<mailto:[email protected]>> Cc: [email protected]<mailto:[email protected]> Subject: Re: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Should there also be ICD10 codes for this? Phillip From: <[email protected]<mailto:[email protected]>> on behalf of Tamara McMahon <[email protected]<mailto:[email protected]>> Date: Thursday, July 7, 2016 at 1:00 PM To: "'Verhagen, Laurel A'" <[email protected]<mailto:[email protected]>>, "Campbell, Walter S" <[email protected]<mailto:[email protected]>>, "Campbell, James R" <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: RE: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Hi, The researcher has specific ICD9 codes, but no specific IgG LOINC codes. Regarding diagnosis, please limit the diagnosis to the ICD9s codes supplied in the query. Regarding labs, you can localize the query to obtain the necessary IgG codes. Thank you, Tamara From: Verhagen, Laurel A [mailto:[email protected]] Sent: Thursday, July 07, 2016 11:48 AM To: Campbell, Walter S <[email protected]<mailto:[email protected]>>; Campbell, James R <[email protected]<mailto:[email protected]>> Cc: Sravani Chandaka <[email protected]<mailto:[email protected]>>; Tamara McMahon <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]>; Gardner, Bret J <[email protected]<mailto:[email protected]>>; McClay, James C <[email protected]<mailto:[email protected]>> Subject: RE: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Hi all, UNMC – thanks so much for your assistance in this discussion. I think at this point, direction should be coming from the requestor and/or KUMC, as the facilitator of the requests. A main question that has not been addressed is whether sites are allowed to localize the query. Again the specifications appear to be vague and the babel example seems to be incorrect, based on Jim Campbell’s review. Have any other DROC-approved sites (KUMC, IU, UIOWA, MCW, Marshfield, MU, UNMC, UTHSCSA) submitted data for this request? If so, how did you address the Ig G requirement? Thanks, Laurel From: Campbell, Walter S [mailto:[email protected]] Sent: Thursday, July 07, 2016 10:51 AM To: Campbell, James R; Verhagen, Laurel A Cc: Sravani Chandaka ([email protected]<mailto:[email protected]>); Tamara McMahon; [email protected]<mailto:[email protected]>; Gardner, Bret J; McClay, James C Subject: RE: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Hi Laurel, I am out this week, as well. How quickly do you need this information? I can get it to you on Monday if that is not too late. Otherwise, I can task one of the "minions" to get it sooner. Please advise. W. Scott Campbell, PhD, MBA Assistant Professor Director of Public Health Laboratory Informatics and Pathology Laboratory Informatics Department of Pathology/Microbiology University of Nebraska Medical Center 985900 Nebraska Medical Center Omaha NE 68198-5900 402-559-9593 (office) 402-350-7851 (mobile) ________________________________ From: Campbell, James R Sent: Wednesday, July 06, 2016 2:34 PM To: Verhagen, Laurel A; Campbell, Walter S Cc: Sravani Chandaka ([email protected]<mailto:[email protected]>); Tamara McMahon; [email protected]<mailto:[email protected]>; Gardner, Bret J; McClay, James C Subject: Re: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Laurel Glad to do so! I am looking out over Loch Ness on a fair Scottish eve as I type and so am directing Scott Campbell to organize the UNMC minions and send a list of LOINC codes that would be appropriate to the query. I have no RELMA access in my current situation but would otherwise be happy to reply. Scott, please work with Bret and Jay to prepare a value set for Laurel and GPC-DEV to use for this query. Jim James R. Campbell MD [email protected]<mailto:[email protected]> Office: 402-559-7505 Secretary: 402-559-7299 Pager: 402-888-1230 On Jul 6, 2016, at 12:34 PM, Verhagen, Laurel A <[email protected]<mailto:[email protected]>> wrote: Jim, Thanks for your expertise! Is it possible to share the LOINC codes used at UNMC for this request? Laurel From: Campbell, James R [mailto:[email protected]] Sent: Wednesday, July 06, 2016 12:01 PM To: Verhagen, Laurel A Cc: Sravani Chandaka ([email protected]<mailto:[email protected]>); Tamara McMahon; [email protected]<mailto:[email protected]> Subject: Re: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection Laurel The LOINC parts code (LP14672-2) is only valid as a defining 'atom' in LOINC and should be ignored for retrieving valid IgG levels from your lab data. I assume this was a simple misinterpretation of the meaning of the LOINC part. Jim James R. Campbell MD [email protected]<mailto:[email protected]> Office: 402-559-7505 Secretary: 402-559-7299 Pager: 402-888-1230 On Jul 5, 2016, at 4:24 PM, Verhagen, Laurel A <[email protected]<mailto:[email protected]>> wrote: Hi Sravani and Tamara, I’m wondering if one of you can help answer a question related to the PI CONNECT query. The Cohort definition doesn’t specify coding for the IgG levels. Marshfield doesn’t populate LP14672-7, which is used in the sample query on babel. Is it appropriate to substitute another test? If so, does the PI want to provide a list of approved codes or can this be localized without PI involvement? I do have data for LOINC 2465-3<https://urldefense.proofpoint.com/v2/url?u=http-3A__s.details.loinc.org_LOINC_2465-2D3.html-3Fsections-3DComprehensive&d=CwMGaQ&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=K46w4rQwaUJuGxCIYEtVubiGOtWo53CRIGSeaPr-Ftw&s=ocg6T0ZpCjvNLbTsVKIRadFm-9n4_0LyZyDIiRV_36Q&e=> IgG [Mass/volume] in Serum or Plasma, as well as several panels that contain the component: MEMBER OF THESE PANELS 34550-4 Immunoglobulin panel [Mass/volume] - Serum 47289-4 IgG and IgG subclass panel [Mass/volume] - Serum 55121-8 Multiple sclerosis panel - Serum and CSF 55295-0 Protein electrophoresis and Immunoglobulins panel - Serum We also have a couple of CPT codes that might be relevant – 82784, 82787. Looking for guidance on how to proceed—or whether Marshfield would be out, because we’re missing LP14672-7. Thanks, Laurel From:[email protected]<mailto:[email protected]> [mailto:[email protected]] On Behalf Of Tamara McMahon Sent: Friday, June 17, 2016 1:54 PM To: [email protected]<mailto:[email protected]>; [email protected]<mailto:[email protected]> Subject: GPC DEID Data Request: Immunoglobulin G Levels and the pattern of infection All, The GPC received a de-identified data request from Dr. Kate Sullivan of the PI-CONNECT PPRN. This query contains labs and diagnosis (ICD-9 codes). The query is located on Babel at Shared\PI-Connect\PIConnect[6-17-2016]. Attached is a description of the search and output criteria. The stratification does not need to be included in the query. Data files should be created using the data builder. You can read about the data builder output and how it is made<https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_wiki_BuilderSaga-23builder-2Dsql-2Dguide&d=CwMFAg&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=1s3q4ZJyND4-iDjqR8VdH3Q5iMWtjrMQmY0D8x20n1A&s=g2vp7MaK6nOY0kvXVBsVaiC0zWtpZ5XEPpL6CVHAqFc&e=> and about the data summary<https://urldefense.proofpoint.com/v2/url?u=https-3A__informatics.gpcnetwork.org_trac_Project_wiki_BuilderSaga-23DataSummary&d=CwMFAg&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=1s3q4ZJyND4-iDjqR8VdH3Q5iMWtjrMQmY0D8x20n1A&s=coDOqgi-3PrCK_xu38j5D9EZvZtg0VNiIOIXpPSWtHs&e=>. Submit the data via this survey<https://urldefense.proofpoint.com/v2/url?u=https-3A__redcap.gpcnetwork.org_surveys_-3Fs-3DN9MEMP84HX&d=CwMFAg&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=1s3q4ZJyND4-iDjqR8VdH3Q5iMWtjrMQmY0D8x20n1A&s=mzY4n_a86rCyjUkVkfh3f5FJPAe4HS3OY3KfQOQf83Q&e=>. Note: I am unavailable next week but will be on the GPC-Dev call 6/28 to discuss any questions about this query or data request. The following institutions have DROC approval and can submit their data at any time. KUMC Indiana Iowa MCW Marshfield Missouri Nebraska UTHSC-SA The following sites do not have DROC approval yet. Please do not submit until approval is in place for your institution. Minnesota UTSW Wisconsin The following sites are not required to run the query. CMH Each site that provides data will be reimbursed $500. Regards, Tamara McMahon Director, Engineering & Product Experience Medical Informatics, University of Kansas Medical Center ________________________________ The contents of this message may contain private, protected and/or privileged information. If you received this message in error, you should destroy the e-mail message and any attachments or copies, and you are prohibited from retaining, distributing, disclosing or using any information contained within. Please contact the sender and advise of the erroneous delivery by return e-mail or telephone. Thank you for your cooperation. _______________________________________________ Gpc-dev mailing list [email protected]<mailto:[email protected]> http://listserv.kumc.edu/mailman/listinfo/gpc-dev<https://urldefense.proofpoint.com/v2/url?u=http-3A__listserv.kumc.edu_mailman_listinfo_gpc-2Ddev&d=CwMGaQ&c=KNVzINr6WAqWApikNSnyDeOu0ck0iFwcrMz92MxUhIs&r=A2PXk2ZGVGBzoEOQMwrrbqse0CnDMUgS4P3-3HOTSAwE8Vfvoc1Wm0NCYFbuU-_5&m=K46w4rQwaUJuGxCIYEtVubiGOtWo53CRIGSeaPr-Ftw&s=gMn6Yw805WgvNKX8iYHlDPacAnFXjZiThEc5YfJ_oi4&e=> The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender. ________________________________ The contents of this message may contain private, protected and/or privileged information. If you received this message in error, you should destroy the e-mail message and any attachments or copies, and you are prohibited from retaining, distributing, disclosing or using any information contained within. Please contact the sender and advise of the erroneous delivery by return e-mail or telephone. Thank you for your cooperation. ________________________________ The contents of this message may contain private, protected and/or privileged information. If you received this message in error, you should destroy the e-mail message and any attachments or copies, and you are prohibited from retaining, distributing, disclosing or using any information contained within. Please contact the sender and advise of the erroneous delivery by return e-mail or telephone. Thank you for your cooperation. ________________________________ UT Southwestern Medical Center The future of medicine, today.
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