What else for tomorrow? * gpc-dev 18 Oct shared notes<https://docs.google.com/document/d/1_Cv0kBsplaOMJ-kNZVmNIwq53IhfQLj5EjLVkcU-BKo/edit>; scribe: WISC
current snapshot: ________________________________ 1. Convene, take roll, review records and plan next meeting * Meeting ID and access code: 817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 (571) 317-3131 * roll: all 12 DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU Reminder - put institution after your name in GoToMeeting preferences * today's scribe: WISC * comments on the agenda? On last week’s notes? No. (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>) Last week’s notes should show regrets from WISC. Recent tickets opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI (i.e. not intended for discussion) * #496 (integrate i2p-transform with HERON ETL meds (prescribing)) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/496#comment:18> Aug 15 design confirmed * Next Meeting: 25 Oct; scribe: CMH? Note LRU schedule<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>, which nominates CMH, UTSW … 2. Milestone:cdm-refresh6<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-refresh6> * #530<https://informatics.gpcnetwork.org/trac/Project/ticket/530> specs (SAS code) for Cycle 2 of PCORnet Data Characterization <https://informatics.gpcnetwork.org/trac/Project/ticket/530>“The beta testing went well at KUMC. The issues in our data that it turned up were…” * CDM 3.1 review requested by DRN OC forum 3. Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db> - due 24 Oct #297<https://informatics.gpcnetwork.org/trac/Project/ticket/297>: Site status, issues * KUMC - done with tumor, med exposure #493<https://informatics.gpcnetwork.org/trac/Project/ticket/493> Additional cases<https://informatics.gpcnetwork.org/trac/Project/ticket/493> - update diagnoses, procedures * Reminder from #448: REDCap survey: diagnoses and procedures for consented Breast Cancer Study patients<https://redcap.gpcnetwork.org/surveys/?s=EEF8DKCA4T> * UTSW - ETA ??? #493<https://informatics.gpcnetwork.org/trac/Project/ticket/493> Additional cases<https://informatics.gpcnetwork.org/trac/Project/ticket/493> - update diagnoses, procedures * UIOWA - ETA Thursday 10/13 - new best guess? #493<https://informatics.gpcnetwork.org/trac/Project/ticket/493> Additional cases<https://informatics.gpcnetwork.org/trac/Project/ticket/493> - update diagnoses, procedures * UMN - ETA Friday 10/14 * #493<https://informatics.gpcnetwork.org/trac/Project/ticket/493> Additional cases<https://informatics.gpcnetwork.org/trac/Project/ticket/493> - update diagnoses, procedures done 4 Oct. * tumor file uploaded * ERROR: Illegal use of 'redcap_data_access_group' fixed in rc_codebook.zip<https://github.com/kumc-bmi/bc_qa/archive/rc_codebook.zip> rev a72e52a * #513 (~3% missing data due to opt-out at UMN) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/513#comment:17> * #480 Missing morphology values<https://informatics.gpcnetwork.org/trac/Project/ticket/480> fixed for UMN * Medication exposure uploaded * “what constitutes a valid RxCUI as far as these imports go?” “The relevant RxCUIs are the direct children of the VA classes that descend from ...” -- ticket:360#comment:10<https://informatics.gpcnetwork.org/trac/Project/ticket/360#comment:10> * UNMC - ETA Friday 10/14. * #533 (code 8 not a valid category for v59_690_rx_hospradiation) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/533#comment:1> * #466 duplicate tumor records: same subject, sequence number<https://informatics.gpcnetwork.org/trac/Project/ticket/466> re-opened * Missing 2 subjects from crosswalk? * Meds done (modulo 2 subjects?) List of RxCUI's updated in REDCap data dictionary ticket:360#comment:10<https://informatics.gpcnetwork.org/trac/Project/ticket/360#comment:10>; ref rx_choices.txt<https://github.com/kumc-bmi/bc_qa/blob/rc_codebook/bc2_collect/rx_choices.txt>. * #480 Missing morphology values<https://informatics.gpcnetwork.org/trac/Project/ticket/480> * “We’re missing NAACCR folder 15.” from NAACCR_ETL <https://informatics.gpcnetwork.org/trac/Project/wiki/NAACCR_ETL>#358 update all sites to include summary of treatment etc. <https://informatics.gpcnetwork.org/trac/Project/ticket/358>Possible work-around: #534<https://informatics.gpcnetwork.org/trac/Project/ticket/534> assemble per-tumor BC data directly from NAACCR record<https://informatics.gpcnetwork.org/trac/Project/ticket/534> created * #535 (bc-emr-registry.py emits times with dates that conflict with Breast Cancer ...) created<https://informatics.gpcnetwork.org/trac/Project/ticket/535> minor - foudn work-around * WISC - ETA Tue 10/18 #493<https://informatics.gpcnetwork.org/trac/Project/ticket/493> Additional cases<https://informatics.gpcnetwork.org/trac/Project/ticket/493> - update diagnoses, procedures * MCW - ETA Fri 10/21 #482<https://informatics.gpcnetwork.org/trac/Project/ticket/482> missing surgery and examined nodes … <https://informatics.gpcnetwork.org/trac/Project/ticket/482>#493<https://informatics.gpcnetwork.org/trac/Project/ticket/493> Additional cases<https://informatics.gpcnetwork.org/trac/Project/ticket/493> - update diagnoses, procedures * MCRF - Friday 10/21 #471 MCRF tumor registry not available in NAACCR file format <https://informatics.gpcnetwork.org/trac/Project/ticket/471>Possible work-around: #534<https://informatics.gpcnetwork.org/trac/Project/ticket/534> assemble per-tumor BC data directly from NAACCR record<https://informatics.gpcnetwork.org/trac/Project/ticket/534> 4. Milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data>, Milestone:antibiotic-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/antibiotic-study-data> * #524<https://informatics.gpcnetwork.org/trac/Project/ticket/524> Analytic Aim 1 individual-level query <https://informatics.gpcnetwork.org/trac/Project/ticket/524>Due date was 12 Oct; extended somewhat (see note from Jim M. in #524) relevant sites: UTSW, WISC (done), UIOWA, KUMC (done), Marshfield (done) * UTSW Received the query on 10/6. Due 10/20. Planning to run this week. * UIOWA - Nick to follow up with Prakash for status 5. Milestone:grouse-research-1<https://informatics.gpcnetwork.org/trac/Project/milestone/grouse-research-1>; GROUSE<https://informatics.gpcnetwork.org/trac/Project/wiki/GROUSE> * #526<https://informatics.gpcnetwork.org/trac/Project/ticket/526> Finder file for GROUSE (KUMC) <https://informatics.gpcnetwork.org/trac/Project/ticket/526>SC: to share the query in https://github.com/kumc-bmi/heron 6. LEC<http://www.gpcnetwork.org/?q=2016LEC> recap * Friday 8am: Claims Data Integration through GROUSE<https://informatics.gpcnetwork.org/trac/Project/wiki/GROUSE> Project and Engaging Investigators * #377 (Social Security Death Master file: regular updates to GPC sites) <https://informatics.gpcnetwork.org/trac/Project/ticket/377#comment:43>added MCRF * #509<https://informatics.gpcnetwork.org/trac/Project/ticket/509> geocoding ETL: reproducible method with version-controlled code <https://informatics.gpcnetwork.org/trac/Project/ticket/509>“At the LEC, Tim went over the materials with me, including some recently added documentation. I took some photos to jog my memory” 7. #459<https://informatics.gpcnetwork.org/trac/Project/ticket/459> How to add GPC sites to SNOW SHRINE network?<https://informatics.gpcnetwork.org/trac/Project/ticket/459> * SNOW Shrine Version<http://listserv.kumc.edu/pipermail/gpc-dev/2016q4/003262.html> Phillip Reeder Upgrade from 1.18.2 to 1.20.1 to match ACT and SCILHS networks? ________________________________ -- Dan
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