What else for tomorrow?
* gpc-dev 18 July shared
notes<https://docs.google.com/document/d/1kijtgKkYXkjn4t2mtxbsx0OezByAuRLntqELcVvKFUQ/edit>;
scribe: UMN
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: UMN
* comments on the agenda? On last week’s notes?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* #622<https://informatics.gpcnetwork.org/trac/Project/ticket/622>
PCORNet CDM Cycle 2 Refresh 2 experience report -
CMH<https://informatics.gpcnetwork.org/trac/Project/ticket/622>
* Next Meeting: 25 July. scribe: ???
* Note LRU scribe schedule in
#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:97>
2. #478 (ADAPTABLE monitoring)
reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/478#comment:36>:
“Query 2 will be distributed to all the sites on 08/07/2017. We(KUMC) offered
to be a beta tester site for the Query 2. Query was shared with KUMC on
07/14/2017. Maren Wennberg from KUMC will be working on it.”
3. #596<https://informatics.gpcnetwork.org/trac/Project/ticket/596> targeted
cancer therapy study feasibility
queries<https://informatics.gpcnetwork.org/trac/Project/ticket/596> due 18 July
* Nicholas: will submit UIOWA’s data on query 3 and send an update out
to the group. Done:
DROC Breast Cancer CRG Request
(#596)<http://listserv.kumc.edu/pipermail/gpc-dev/2017q3/004091.html> Smith,
Nicholas C
* Re - in LOINC: Nick to make an adjustment for Query 3 on site specific
factor 15 and repair the LOINC issue.
* Jim: Will put revised query 3 on the ticket. (OBE?)
* Query 1, 2, 3:
* UNMC - “I am forwarding all three data queries to Nick.” - Campbell
Fri 12:47:47
“Thanks for forwarding it, Jim” Smith Fri 12:51 PM
* MCRF - “I submitted results from Marshfield based on ...” Verhagen
Thu Jul 13 17:17:02
“No this [missing LOINC] is not a problem.” -Smith Fri 11:34:15
* UTSW - “Query 1,2,& 3 have been uploaded by UTSW.” -- Reeder Mon
13:03:29
* MU: “if that [replaced 560 with 380] works then there is no need
for me to re-run them, cause that is the data you have” - McNeely Fri 13:42:55
* WISC -
* KUMC -
* MCW -
* UMN -
4.
Milestone:cdm-cycle3<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-cycle3>
due July 31
* #549 (discharge info disconnected from parts of some EI visits) closed
fixed<https://informatics.gpcnetwork.org/trac/Project/ticket/549#comment:6>
* #589<https://informatics.gpcnetwork.org/trac/Project/ticket/589>
principal diagnosis 10% threshold in PCORNet
CDM<https://informatics.gpcnetwork.org/trac/Project/ticket/589> news from IU?
* #579<https://informatics.gpcnetwork.org/trac/Project/ticket/579> Data
Characterization - Cycle 3
Tracking<https://informatics.gpcnetwork.org/trac/Project/ticket/579>
5. Milestone:cohort-char1
<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>#570:
collect expanded obesity cohort data
comment:43<http://informatics.gpcnetwork.org/trac/Project/ticket/570#comment:43>:
* MCW done July 14 (comment:47)
* UIOWA ETA? Brian will talk this through with Mike Bingham on 7/25
6. Milestone:gpc-phase2-h4
<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc-phase2-h4>#408<https://informatics.gpcnetwork.org/trac/Project/ticket/408>
collect Enrollment numbers for interim report (milestone
2.3.5)<https://informatics.gpcnetwork.org/trac/Project/ticket/408> in progress
7.
Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d>
* #544<https://informatics.gpcnetwork.org/trac/Project/ticket/544> how
to convert ACS raw variables to CAP variables (e.g. type of health insurance)?
<https://informatics.gpcnetwork.org/trac/Project/ticket/544>Attachment
GeocodingOptionsForGPC-2017_06_27-bb.docx<https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/544/GeocodingOptionsForGPC-2017_06_27-bb.docx><https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/544/GeocodingOptionsForGPC-2017_06_27-bb.docx>
added
* Approach 1. Add Census tract information to EHR data
“we currently don't have the governance to take approach 1”
* Approach 2. Link health data to geocoded variables
* Responses are pending from:
* UIOWA - Smith
* UNMC - McClay
* UMN - Meyer
* UTSW - Reeder
* MCW - Kosinski
* MU - Mosaa
* IU - Hood
* KUMC - Connolly / Liu - prefer 1, if covered by IRB
* #546<https://informatics.gpcnetwork.org/trac/Project/ticket/546>
Oracle port of
NextDextractionCode_12.1.16.sql<https://informatics.gpcnetwork.org/trac/Project/ticket/546>
- check Aug target
8.
Milestone:snow-shrine-1<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-1>
, shrine-2
* #610 (MCRF update spoke(s) with prod hub cert)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/610#comment:4>
* #525<https://informatics.gpcnetwork.org/trac/Project/ticket/525> basic
SNOW ontology alignment: Demographics,
Diagnoses<https://informatics.gpcnetwork.org/trac/Project/ticket/525> - KUMC
has all but 30 demographics terms mapped
* #602<https://informatics.gpcnetwork.org/trac/Project/ticket/602> SNOW
SHRINE authorization and
governance<https://informatics.gpcnetwork.org/trac/Project/ticket/602> - update
from KUMC
* #586 (SNOW SHRINE node at CMH with SCILHS PCORnet ontology)
reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/586#comment:4>
9.
Milestone:grouse-resdac-2<https://informatics.gpcnetwork.org/trac/Project/milestone/grouse-resdac-2>
* #621<https://informatics.gpcnetwork.org/trac/Project/ticket/621>
review GPC Pilot
applications<https://informatics.gpcnetwork.org/trac/Project/ticket/621> by Aug
17
* #617<https://informatics.gpcnetwork.org/trac/Project/ticket/617> two
more years of CMS data for
GROUSE<https://informatics.gpcnetwork.org/trac/Project/ticket/617> request
recently got some level of approval
* #581<https://informatics.gpcnetwork.org/trac/Project/ticket/581>
Crosswalk files for the remaining 4 GPC sites back from
GDIT<https://informatics.gpcnetwork.org/trac/Project/ticket/581>
* #619 (GROUSE: integrate CDM data from GPC sites)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/619> to clarify
plans
* #620 (annual update of GROUSE i2b2 data from sites) created by
rwaitman<https://informatics.gpcnetwork.org/trac/Project/ticket/620>
________________________________
--
Dan
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