Thanks for sharing Phillip. Andrew: I see the site seer summary working for a query of just “Breast”! I can then link it to sex=female and a diagnosis icd9 of heart failure!
But, when I add icd-0-3 infiltrating ductal carcinoma (8500/3, 8500/2) as a conjunction, it works here and at Dallas but not at UMN. Russ From: Phillip Reeder <[email protected]> Date: Tuesday, October 10, 2017 at 1:36 PM To: Andrew Hangsleben <[email protected]>, Russ Waitman <[email protected]> Cc: "[email protected]" <[email protected]> Subject: Re: SNOW Shrine Hub UTSW also had some differences. I ended up deploying the KUMC as the local terminology as well so I could use a 1 to 1 mapping that I got from KUMC and added to my existing mapping file. It does miss some local values that my terminology contains, so at some point those may need to be added to the common shrine terminology for NAACCR, but it will work for the vast majority of the data. Phillip From: Gpc-dev <[email protected]<mailto:[email protected]>> on behalf of Andrew Hangsleben <[email protected]<mailto:[email protected]>> Date: Tuesday, October 10, 2017 at 1:32 PM To: Russ Waitman <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: SNOW Shrine Hub Hi Russ, It looks like our NAACCR ontology was slightly different from yours. Where you have: \\SHRINE_NAACCR\i2b2\naaccr\S:1 Cancer Identification\0521 Morph--Type&Behav ICD-O-3\850-854\8500/3\ We had: \\SHRINE_NAACCR\i2b2\naaccr\S:1 Cancer Identification\0521 Morph--Type and Behav ICD-O-3\850-854\8500/3\ I replaced our ontology with the one attached to https://informatics.gpcnetwork.org/trac/Project/ticket/631. Hopefully we should be all set now. Regards, Andrew On Tue, Oct 10, 2017 at 12:02 PM, Russ Waitman <[email protected]<mailto:[email protected]>> wrote: Hi Kathleen, Andrew and Tim, We were discussing SHRINE and UMN wrt tumor registry and regular on the dev call. Kathy: to confirm current state: - I can run a query for females with heart failure and I hear back loud and clear now from UMN! o I also hear back from San Antonio, UTSW, KUMC, MCRF (though the count is low and I suspect it’s a test database). - If I run a query of Breast Cancer and Infiltrating duct carcinoma and I get responses from UTSW and KUMC but UMN reports as “could not map query terms”. Russ From: Gpc-dev [mailto:[email protected]<mailto:[email protected]>] On Behalf Of Andrew Hangsleben Sent: Monday, October 09, 2017 3:41 PM To: [email protected]<mailto:[email protected]> Subject: SNOW Shrine Hub Hi Everyone, Could the person responsible for the SNOW hub reach out to me? I think it used to be KW, but I'm unsure who it is now. Regards, Andrew Hangsleben -- Andrew Hangsleben Developer/Analyst Academic Health Center - Information Systems<http://hub.ahc.umn.edu/ahc-information-systems> University of Minnesota Phone: (612) 625-1285<tel:(612)%20625-1285> Email: [email protected]<mailto:[email protected]> -- Andrew Hangsleben Developer/Analyst Academic Health Center - Information Systems<http://hub.ahc.umn.edu/ahc-information-systems> University of Minnesota Phone: (612) 625-1285 Email: [email protected]<mailto:[email protected]> ________________________________ UT Southwestern Medical Center The future of medicine, today.
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