You might review the relevant design issue ticket: #332 How to deal with & in i2b2 paths, especially in NAACCR tumor registry ontology?<https://informatics.gpcnetwork.org/trac/Project/ticket/332>
-- Dan ________________________________ From: Gpc-dev [gpc-dev-boun...@listserv.kumc.edu] on behalf of Andrew Hangsleben [hangs...@umn.edu] Sent: Wednesday, October 11, 2017 1:45 PM To: Russ Waitman Cc: GPC-DEV@LISTSERV.KUMC.EDU Subject: Re: SNOW Shrine Hub Hi Russ, Looks like I forgot to reload my adapter mappings. I've reloaded them now, but I'm having problems running a query with a term that includes an ampersand (such as the one you've been testing). I get errors in the proxy.log that suggest the ampersand isn't being escaped during some part of the process and the query doesn't even make it to shrine. Any thoughts? Regards, Andrew On Wed, Oct 11, 2017 at 10:45 AM, Russ Waitman <rwait...@kumc.edu<mailto:rwait...@kumc.edu>> wrote: Thanks for sharing Phillip. Andrew: I see the site seer summary working for a query of just “Breast”! I can then link it to sex=female and a diagnosis icd9 of heart failure! But, when I add icd-0-3 infiltrating ductal carcinoma (8500/3, 8500/2) as a conjunction, it works here and at Dallas but not at UMN. Russ From: Phillip Reeder <phillip.ree...@utsouthwestern.edu> Date: Tuesday, October 10, 2017 at 1:36 PM To: Andrew Hangsleben <hangs...@umn.edu<mailto:hangs...@umn.edu>>, Russ Waitman <rwait...@kumc.edu<mailto:rwait...@kumc.edu>> Cc: "GPC-DEV@LISTSERV.KUMC.EDU<mailto:GPC-DEV@LISTSERV.KUMC.EDU>" <GPC-DEV@listserv.kumc.edu<mailto:GPC-DEV@listserv.kumc.edu>> Subject: Re: SNOW Shrine Hub UTSW also had some differences. I ended up deploying the KUMC as the local terminology as well so I could use a 1 to 1 mapping that I got from KUMC and added to my existing mapping file. It does miss some local values that my terminology contains, so at some point those may need to be added to the common shrine terminology for NAACCR, but it will work for the vast majority of the data. Phillip From: Gpc-dev <gpc-dev-boun...@listserv.kumc.edu<mailto:gpc-dev-boun...@listserv.kumc.edu>> on behalf of Andrew Hangsleben <hangs...@umn.edu<mailto:hangs...@umn.edu>> Date: Tuesday, October 10, 2017 at 1:32 PM To: Russ Waitman <rwait...@kumc.edu<mailto:rwait...@kumc.edu>> Cc: "GPC-DEV@LISTSERV.KUMC.EDU<mailto:GPC-DEV@LISTSERV.KUMC.EDU>" <GPC-DEV@listserv.kumc.edu<mailto:GPC-DEV@listserv.kumc.edu>> Subject: Re: SNOW Shrine Hub Hi Russ, It looks like our NAACCR ontology was slightly different from yours. Where you have: \\SHRINE_NAACCR\i2b2\naaccr\S:1 Cancer Identification\0521 Morph--Type&Behav ICD-O-3\850-854\8500/3\ We had: \\SHRINE_NAACCR\i2b2\naaccr\S:1 Cancer Identification\0521 Morph--Type and Behav ICD-O-3\850-854\8500/3\ I replaced our ontology with the one attached to https://informatics.gpcnetwork.org/trac/Project/ticket/631. Hopefully we should be all set now. Regards, Andrew On Tue, Oct 10, 2017 at 12:02 PM, Russ Waitman <rwait...@kumc.edu<mailto:rwait...@kumc.edu>> wrote: Hi Kathleen, Andrew and Tim, We were discussing SHRINE and UMN wrt tumor registry and regular on the dev call. Kathy: to confirm current state: - I can run a query for females with heart failure and I hear back loud and clear now from UMN! o I also hear back from San Antonio, UTSW, KUMC, MCRF (though the count is low and I suspect it’s a test database). - If I run a query of Breast Cancer and Infiltrating duct carcinoma and I get responses from UTSW and KUMC but UMN reports as “could not map query terms”. Russ From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu<mailto:gpc-dev-boun...@listserv.kumc.edu>] On Behalf Of Andrew Hangsleben Sent: Monday, October 09, 2017 3:41 PM To: GPC-DEV@LISTSERV.KUMC.EDU<mailto:GPC-DEV@LISTSERV.KUMC.EDU> Subject: SNOW Shrine Hub Hi Everyone, Could the person responsible for the SNOW hub reach out to me? I think it used to be KW, but I'm unsure who it is now. Regards, Andrew Hangsleben -- Andrew Hangsleben Developer/Analyst Academic Health Center - Information Systems<http://hub.ahc.umn.edu/ahc-information-systems> University of Minnesota Phone: (612) 625-1285<tel:(612)%20625-1285> Email: hangs...@umn.edu<mailto:hangs...@umn.edu> -- Andrew Hangsleben Developer/Analyst Academic Health Center - Information Systems<http://hub.ahc.umn.edu/ahc-information-systems> University of Minnesota Phone: (612) 625-1285<tel:(612)%20625-1285> Email: hangs...@umn.edu<mailto:hangs...@umn.edu> ________________________________ UT Southwestern Medical Center The future of medicine, today. -- Andrew Hangsleben Developer/Analyst Academic Health Center - Information Systems<http://hub.ahc.umn.edu/ahc-information-systems> University of Minnesota Phone: (612) 625-1285 Email: hangs...@umn.edu<mailto:hangs...@umn.edu>
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