What else for tomorrow?
* 24 Apr gpc-dev/Cancer RCR Meeting
Notes<https://docs.google.com/document/d/1jB4nvXw-6ZlWR1PdvLQo8G-i4qtqd_10XV364JH3zxI/edit#>
by UNMC
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* Roll; comments on the agenda? (ref
SoftwareDev#tracking<https://informatics.gpcnetwork.org/trac/Project/wiki/SoftwareDev#tracking>)
Reminder - put site after your name in GoToMeeting preferences
* all 12 GPC
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRI, UMN, UNMC, UTHSCSA, UTSW, MU, IU
* Cancer RCR project sites? UFL, VUMC, MUSC
* Today's scribe: UNMC
* Comments on last week’s notes?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
* Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* (none this week)
* Next meeting(s): May 1; Scribe: UTHSCSA?
* Note scribe rotation
appendix<https://docs.google.com/document/d/1ttXUveymyAZ9Hs0c84LXPjgHgz1bJ2IOaytuN3uJHjE/edit#heading=h.7048noacdrce>
2.
Milestone:cancer-rcr-3<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-3>
/ Grouse-3
Integrating 2014-2015 data: requesting updated crosswalk files physical media
sent by Apr 24.
#647 Send copy of CDM to KUMC for Cancer RCR / GROUSE integration testing
<https://informatics.gpcnetwork.org/trac/Project/ticket/647>#644 collect
remaining i2b2 datamarts for
GROUSE<https://informatics.gpcnetwork.org/trac/Project/ticket/644>
* Status of crosswalk (due to GDIT by 4/24 or 4/25), CDM, i2b2 by RCR
aim 3 site
* KUMC
* #687 (KUMC GROUSE - Crosswalk file
refresh)<https://informatics.gpcnetwork.org/trac/Project/ticket/687>: DONE
* CDM - not integrated yet. (KUMC:ticket:5192)
* I2b2 data - 3rd time for HCPCS: (KUMC:ticket:5180)
* UIOWA
* #693 UIOWA Finder file
refresh<https://informatics.gpcnetwork.org/trac/Project/ticket/693> ETA = Ship
on 4/17
* CDM Sent 4/17
* i2b2 data: ETA 4/24 pending script
* MCRF provided
SQL_i2b2.zip<https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/644/SQL_i2b2.zip><https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/644/SQL_i2b2.zip>
Apr 17
* UNMC
* #695 UNMC Finder file
refresh<https://informatics.gpcnetwork.org/trac/Project/ticket/695> done <= Apr
20
* CDM - Waiting on cdm refresh first
* i2b2 data - submitted; Integration done; visible to analysts
such as Mary S.
* MCRF
* #696 (Finder file refresh for GROUSE (MCRF))
created<https://informatics.gpcnetwork.org/trac/Project/ticket/696>
* 4/10- On track for 4/24 - ETA ship 4/20
* CDM -
* ETA 4/20
* i2b2 data - received;
#644<https://informatics.gpcnetwork.org/trac/Project/ticket/644>; need to
resubmit with new tumor data. ETA 4/27?
* MU
* #697 MU Finder file
refresh<https://informatics.gpcnetwork.org/trac/Project/ticket/697> ETA 24th of
April.
* CDM - received
Staging, integration @KUMC TODO (KUMC:ticket:5192)
* i2b2 data - ETA Apr 24
* Risk: may be bumped by CDM refresh
* UTSW
* #698 UTSW Finder file
refresh<https://informatics.gpcnetwork.org/trac/Project/ticket/698> ETA 24th
April.
* CDM - Sent
* i2b2 data - sent one; needs to send update for HCPCS etc.
* MCW
* #699 MCW Finder file
refresh<https://informatics.gpcnetwork.org/trac/Project/ticket/699> done Apr 20
* CDM - sent
* i2b2 data - integration @KUMC in progress (KUMC:ticket:5170,
#5192)
* UMN
* Finder File
* CDM
* i2b2 data
* WISC
* Finder File
* CDM
* i2b2 data
* Non-Aim 3 sites
* IU
* #700 IU Finder file
refresh<https://informatics.gpcnetwork.org/trac/Project/ticket/700>
* CDM -
* i2b2 data
* UTHSCSA
* Finder File
* Apr 17: not approved by leaders. Need to meet with them.
* CDM will send in once refreshed with i2b2.
* I2b2 data naaccr on hold until cdm done. 3 weeks after cdm
* #677<https://informatics.gpcnetwork.org/trac/Project/ticket/677>
Develop and test Aim 3 SAS code
<https://informatics.gpcnetwork.org/trac/Project/ticket/677>Ryan shared a draft
Apr 17
* #623 (training for GROUSE SQL queries)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/623#comment:20>
done, right?
1.
Milestone:cancer-rcr-1<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-1>
* #690 (Review RCR use case reports from 1st data pull and provide
results) colorectal case review:
<https://informatics.gpcnetwork.org/trac/Project/ticket/690> Deadline - 4/24
* Done: MUSC, UFL, MCW
Other: VUMC
* Not Done: KUMC, UIOWA, UNMC, MCRF, UTSW, UMN
* #701 UMN - Pull and submit tumor analysis dataset and CDM tables for
cohort (2nd
submission)<https://informatics.gpcnetwork.org/trac/Project/ticket/701>
* Redcap file size woes continue...
* #651 Load infusion data to CDM v 4.0 med_admin table and submit
<https://informatics.gpcnetwork.org/trac/Project/ticket/651>Describe logic for
event mapping of realized admin events
* MCRF done Apr 17
* Not Done: MUSC, VUMC, UMN, UTSW, MU
2.
Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d>
* #689 next-d 3rd
batch<https://informatics.gpcnetwork.org/trac/Project/ticket/689> due Apr 20
* #682 (next-d 1st batch: Demographic, Encounter)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/682#comment:18>
done, right?
* #685<https://informatics.gpcnetwork.org/trac/Project/ticket/685>
next-d 2nd batch: Socio-economic status (SES), Vital, Procedure,
Diagnosis<https://informatics.gpcnetwork.org/trac/Project/ticket/685> done?
3. PCORnet CDM: Data Curation Query Cycle 4, Refresh 2 (CDM 3.1)
* Distributed 4/16; due 4/30
* Any sites at risk?
________________________________
--
Dan
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