you're giving me nightmares. :) Please switch to the JVM databuilder.
latest release, attached to https://informatics.gpcnetwork.org/trac/Project/wiki/DataBuilder , is https://informatics.gpcnetwork.org/trac/Project/attachment/wiki/DataBuilder/seine-databuilder-0.5-0246c7a3b118.zip Unzip that and you'll find a README with Usage and Installation instructions. The README is also available at https://bitbucket.org/gpcnetwork/heron_extract -- Dan ________________________________ From: Gpc-dev [gpc-dev-boun...@listserv.kumc.edu] on behalf of Pedersen, Jay G [jay.peder...@unmc.edu] Sent: Tuesday, May 15, 2018 4:12 PM To: gpc-dev@listserv.kumc.edu Subject: Re: UNMC -- trying to use R Data Builder -- having an issue "error from back-end, mismatched tag" Hi, We seem to be missing a file called "rgate.cgi" from the /var/www/cgi-bin folder on our DEID machine. We have the dfbuild.cgi file there, but not rgate.cgi. Any hints on where we might obtain? [Tue May 15 13:58:18 2018] [error] [client 137.197.30.107] script not found or unable to stat: /var/www/cgi-bin/rgate.cgi, referer: https://deid.rito.unmc.edu/webclient/ Jay Pedersen, M.A. Department of Pathology/Microbiology University of Nebraska Medical Center 985900 Nebraska Medical Center Omaha NE 68198-5900 402-559-9487<tel:402-559-9593> (office) 402-739-3496<tel:402-350-7851> (mobile) ________________________________ From: Pedersen, Jay G Sent: Tuesday, May 15, 2018 3:08:42 PM To: gpc-dev@listserv.kumc.edu Subject: UNMC -- trying to use R Data Builder -- having an issue "error from back-end, mismatched tag" Hi, We are attempting to use the historic R Data builder plugin, installed about 4 years ago. It has worked for us in the past but is now doing something we don't understand. In the past, this resulted in a JSON file being created on our de-identified server in /var/log/data_builder/queue For example: /var/log/data_builder/queue/2016-04-12T15:10:30.023156-jay.pedersen.json This did not appear to occur today when we tried this. Attempt #2. Attempt from firefox browser When I use firefox to try this, I see the following error error from back-end: error:mismatched tag: line 262, column Attempt #1. Attempt from Chrome browser We don't see an error in the client, but .. In the system error log we see the following message at the same time we are attempting the request: [Tue May 15 14:08:22 2018] [error] [client 137.197.93.251] File does not exist: /var/www/html/webclient/js-i2b2/cells/plugins/fsm/KaplanMeierStat/assets, referer: https://deid.rito.unmc.edu/webclient/ Final thoughts: Thoughts on this? I think the firefox message is probably the more useful clue, but that is just my guess. Would there be benefit to moving to the updated Data Build code that Dan made in Java a year and a half back or so? If so, could we be pointed to useful documentation for installing it or get help installing it? Thanks! Jay Pedersen, M.A. Department of Pathology/Microbiology University of Nebraska Medical Center 985900 Nebraska Medical Center Omaha NE 68198-5900 402-559-9487<tel:402-559-9593> (office) 402-739-3496<tel:402-350-7851> (mobile) The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender.
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