What else for tomorrow?
* 3 July gpc-dev/Cancer RCR Meeting Notes by
MCW<https://docs.google.com/document/d/1rJDeYd_cqeHuYswXlhwjHlmFX7auKRTUJMwxDfGw2rA/edit#>
current snapshot:
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* Roll; comments on the agenda? (ref
SoftwareDev#tracking<https://informatics.gpcnetwork.org/trac/Project/wiki/SoftwareDev#tracking>)
Reminder - put site after your name in GoToMeeting preferences
* all 12 GPC
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF/MCRI, UMN, UNMC, UTHSCSA, UTSW,
MU, IU, Utah
* Cancer RCR project sites? UFL, VUMC, MUSC
* Today's scribe: Andrew/MCW per Jun 19
* GPC queries to discuss? Sickle Cell, IBT, LSS, others?
* Comments on last week’s notes?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* #706 (GPC Pilot Grant Project (Neena Sharma) Data Request - MCW and
UIOWA) created<https://informatics.gpcnetwork.org/trac/Project/ticket/706>
* Next meeting(s): July 10 Scribe: UMN? Utah?
Note scribe rotation
appendix<https://docs.google.com/document/d/1ttXUveymyAZ9Hs0c84LXPjgHgz1bJ2IOaytuN3uJHjE/edit#heading=h.7048noacdrce>
2.
milestone:cancer-rcr-1<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-1>
* #705<https://informatics.gpcnetwork.org/trac/Project/ticket/705> -
KUMC CDM NAACCR Death Date Mismatch dconnolly
3. RCR - Aim 3
cancer-rcr-3<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-3>
/ Grouse-3
* Status of RCR aim 3 data by site
* #687<https://informatics.gpcnetwork.org/trac/Project/ticket/687>
KUMC GROUSE integration
Lav to finalize onto analysis server with new (yr4-5) Crosswalks
* #693<https://informatics.gpcnetwork.org/trac/Project/ticket/693>
GROUSE UIOWA i2b2/CDM
“rows are truncated to 257 characters
Please resubmit med_admin and harvest table with the full length of rows.”
* #695<https://informatics.gpcnetwork.org/trac/Project/ticket/695>
UNMC CDM - received Jun 28; Lav @ KUMC doing quality checks - birthdays don’t
line up between CDM and i2b2; different builds?
* #696<https://informatics.gpcnetwork.org/trac/Project/ticket/696>
MCRF CDM: received Jun 12; Daryl @ KUMC “having some difficulty reading the sas
files” Jun 27
* #697<https://informatics.gpcnetwork.org/trac/Project/ticket/697>
integrate MU i2b2, CDM datamarts; Lav @ KUMC doing quality checks
* #698<https://informatics.gpcnetwork.org/trac/Project/ticket/698>
update UTSW i2b2, CDM datamarts; owner: KUMC
* #699<https://informatics.gpcnetwork.org/trac/Project/ticket/699>
integrate MCW CDM, i2b2; owner: KUMC
Received crosswalk with date_off(date_shift) Jun 25.
* #677<https://informatics.gpcnetwork.org/trac/Project/ticket/677>
Develop and test Aim 3 SAS code
<https://informatics.gpcnetwork.org/trac/Project/ticket/677>Ref: Using GROUSE
for
Analysis<https://docs.google.com/presentation/d/1scQ5KfSTMIoBwgPu0-_o8-Gik24jlCk-i9ix2ErcgNo/edit>
slides: Aim 3 framework,
status<https://docs.google.com/presentation/d/1scQ5KfSTMIoBwgPu0-_o8-Gik24jlCk-i9ix2ErcgNo/edit#slide=id.g37ca31954b_1_10>
* ETA 10 July; stretch goal: 3 July
4.
milestone:text-notes-1<https://informatics.gpcnetwork.org/trac/Project/milestone/text-notes-1>
De-identification
* #572 enterprise scale unstructured text notes de-identified, in
i2b2<https://informatics.gpcnetwork.org/trac/Project/ticket/572>
* HERON Table Rock Includes ~50 Million Searchable De-Identified
Physician Notes<https://informatics.kumc.edu/work/blog/2018/06/slug> from the
KUMC Informatics blog Jun 20
5.
milestone:snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2>
,
milestone:snow-shrine-3<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-3>
* #201<https://informatics.gpcnetwork.org/trac/Project/ticket/201> Align
ACT, ARCH/SCHILS c_table_cd in table_access (item_key) across
sites<https://informatics.gpcnetwork.org/trac/Project/ticket/201>
* ACT network meeting in Boston
<http://listserv.kumc.edu/pipermail/gpc-all/2018-June/000303.html>Campbell June
25, 2018 10:48 AM to gpc-all
* #90<https://informatics.gpcnetwork.org/trac/Project/ticket/90>
Diagnoses Modifiers for data attribution
<https://informatics.gpcnetwork.org/trac/Project/ticket/90>ACT is discussing
whether this is initially in scope or not too.
6. PCORnet CDM v4.1
(milestone:pcornet-cdm-4<https://informatics.gpcnetwork.org/trac/Project/milestone/pcornet-cdm-4>)
* All network partners should implement v4.1 prior to the Data Curation
Cycle 5 in July. (Distributed 7/2; Due 8/6)
* Updated CDM, parseable file & Value Set Appendix available on
iMeet<http://r20.rs6.net/tn.jsp?f=0010dYIDkJmRA9Dm1IV13MKlEVhmvoOYfGLPR_M9lq1sxTuKPZpHwWLiQpyKLjxD9vjxWjS1-NeYwCFNe7w3ZSHEerZIIbGrnB01MCreRf7GeECV8kGKXoAAOJuPeupg0sikpbzR9WqzfQ0cM5adnI2silcIFAqJTHOXQE9iXpryQBqMCCgc7NFuMPyWTf4I9n2wc2UAo83J6RnxykOVb0SMMbz3pRS4bzOUHadMeejYksl3TVrWWdSC7hjIfaB2TNturEziTlIG_70LcEOWjxtx4rKxKjTSN_fIdMh9JB4GHyRYC3iuA3AUQCxLQy3ENefixSXdd8Bdb7tmw93AybsHDH33YikbSjcnVZgQYIYK1gVEc_x6rFU1r4QDlPILIsb9AYjU7G9DiAR1bpW9Q9Y1o-eWvG-SBEsfAPdcStKIjpbo9AAJypxrpuL058lDnQKZ2qh_Ar7BbKGv9ydaf2lJ_WsMIHmsG2S3HgsoLJfWcleabILmlmtUX0FGkRKO0ZC3ZofRCgrXlA6QRffNvKIitp3QLJSyh3uprBRDX5Re0GHgFUvArzgUK_EW5ivX-6xg-QxG9N0opzbrmhzd7FCepLqX-2W6rX-&c=v5Tmvv0IlvV1fKqJgLi-wHG0X_lxiypnO2BYVC8nSo1eSHxwILjFZA==&ch=TroRFmFcbHRAokHFm54-F8-4lSaZRwBY9QNY1GQRXimUg8KibZmNdg==>
* Status of progress by site;
* Data model populated? If not, when?
* Run CDM v4.1 Diagnostic
query<https://pcornet.imeetcentral.com/drnoc-workgroups/folder/WzIwLDcyNTA1NTJd/WzIsNjAzMzkxNTFd/>?
* Sites
* KUMC -
* CMH -
* UIOWA -
* WISC -
* MCW -
* Marshfield -
* UMN -
* UNMC -
* UTHSCSA -
* UTSW -
* MU -
* IU -
* Utah -
________________________________
--
Dan
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