Michael, You may try without setting SDK at all (remove --with-macosx-sdk= and CONDA_BUILD_SYSROOT), but I doubt it will. CONDA_BUILD_SYSROOT is not a workaround, it’s needed for conda.
(If indeed necessary to set SDK, it might be better to use: CONDA_BUILD_SYSROOT=$(xcrun --show-sdk-path) to use present SDK while building GRASS, but make sure to set MACOSX_DEPLOYMENT_TARGET.) What seems to work for compiling extensions, is modifying the file: /Applications/GRASS-7.9.app/Contents/Resources/include/Make/Platform.make deleting the 4 instances of the text: -isysroot /Users/cmbarton/SDKs/MacOSX10.14.sdk I cannot however tell whether this works without Xcode. Best, Nicklas > On 6 Aug 2020, at 00:48, Michael Barton <michael.bar...@asu.edu> wrote: > > This has to do with some kind of change in master (not in v. 7.8.4dev as of > 25 July) that caused configure to fail with a bogus missing zlib message. > Nicklas found a workaround by adding > > export CONDA_BUILD_SYSROOT=[hard path to SDK] > > to the configure script. But that is now causing problems with compiling > through g.extension. So we need to find out why configure is failing. > > I've filed a bug report at: https://github.com/OSGeo/grass/issues/880 > <https://github.com/OSGeo/grass/issues/880> > > > Michael > ____________________ > C. Michael Barton > Director, Center for Social Dynamics & Complexity > Director, Network for Computational Modeling in Social & Ecological Sciences > Professor of Anthropology, School of Human Evolution & Social Change > Head, Graduate Faculty in Complex Adaptive Systems Science > Arizona State University > > voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) > fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) > www: 'http://www.public.asu.edu/~cmbarton > <http://www.public.asu.edu/~cmbarton>, https://complexity.asu.edu/csdc' > <https://complexity.asu.edu/csdc'> > > > > > > > > > > > > > > > > > > >> On Aug 5, 2020, at 3:16 PM, Michael Barton <michael.bar...@asu.edu >> <mailto:michael.bar...@asu.edu>> wrote: >> >> It's better if the binary does not need any SDK so people can use it without >> installing Xcode. It really shouldn't be necessary. There should be all the >> tools needed for compiling within the miniconda package installed in the >> app. I'm pretty sure I know what line in configure is causing this. Need to >> see how to get around it. >> >> Michael >> ____________________ >> C. Michael Barton >> Director, Center for Social Dynamics & Complexity >> Director, Network for Computational Modeling in Social & Ecological Sciences >> Professor of Anthropology, School of Human Evolution & Social Change >> Head, Graduate Faculty in Complex Adaptive Systems Science >> Arizona State University >> >> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >> www: 'http://www.public.asu.edu/~cmbarton >> <http://www.public.asu.edu/~cmbarton>, https://complexity.asu.edu/csdc' >> <https://complexity.asu.edu/csdc'> >> >> >> >>> On Aug 5, 2020, at 3:04 PM, Steven Pawley <dr.stevenpaw...@gmail.com >>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>> >>> I’m on 10.15 (on a relatively new Mac) and officially Xcode only ships with >>> the latest SDK. I think unofficially it might be possible to copy older >>> SDKs into the Xcode app bundle but presumably not ideal. >>> >>> >>>> On Aug 5, 2020, at 3:46 PM, Michael Barton <michael.bar...@asu.edu >>>> <mailto:michael.bar...@asu.edu>> wrote: >>>> >>>> This error implies that you need the 10.14.sdk folder. Why would that be >>>> so? That would be a problem. >>>> >>>> Michael >>>> ____________________ >>>> C. Michael Barton >>>> Director, Center for Social Dynamics & Complexity >>>> Director, Network for Computational Modeling in Social & Ecological >>>> Sciences >>>> Professor of Anthropology, School of Human Evolution & Social Change >>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>> Arizona State University >>>> >>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>> www: 'http://www.public.asu.edu/~cmbarton >>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=HdCFQffudEp5qahnvPaiTLzJsh65rn-5Ab710fbU1vY&s=fyXN3VStjHZGCQbsYN2_xQ13D7SMjIs8kHrGU5a2_jY&e=>, >>>> https://complexity.asu.edu/csdc' >>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=HdCFQffudEp5qahnvPaiTLzJsh65rn-5Ab710fbU1vY&s=m8TFRpKA72VXur99soNzYcxoGw5_Ss7Q1bEWk22hE6U&e=> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>>> On Aug 5, 2020, at 2:39 PM, Steven Pawley <dr.stevenpaw...@gmail.com >>>>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>>>> >>>>> Hi Michael, >>>>> >>>>> Thanks for updating. I can still install python-based extensions without >>>>> any error, however I still get the same error for compiled code: >>>>> >>>>> g.extension extension=r.fill.gaps >>>>> >>>>> Fetching <r.fill.gaps> from GRASS GIS Addons repository (be patient)... >>>>> Compiling... >>>>> clang-10: warning: no such sysroot directory: >>>>> '/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot] >>>>> cell_funcs.c:21:10: fatal error: 'math.h' file not found >>>>> #include <math.h> >>>>> ^~~~~~~~ >>>>> 1 error generated. >>>>> make: *** [OBJ.x86_64-apple-darwin19.6.0/cell_funcs.o] Error >>>>> 1 >>>>> ERROR: Compilation failed, sorry. Please check above error messages. >>>>> >>>>> Steve >>>>> >>>>>> On Aug 5, 2020, at 2:00 PM, Michael Barton <michael.bar...@asu.edu >>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>> >>>>>> Steve, >>>>>> >>>>>> I just now posted a new updated GRASS 7.9dev that includes svn in the >>>>>> app. It solved the g.extension problem for me. Can you test and see if >>>>>> it solves it for you too? >>>>>> >>>>>> Michael >>>>>> ____________________ >>>>>> C. Michael Barton >>>>>> Director, Center for Social Dynamics & Complexity >>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>> Sciences >>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>> Arizona State University >>>>>> >>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, >>>>>> https://complexity.asu.edu/csdc' >>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>>> On Aug 4, 2020, at 11:59 AM, Michael Barton <michael.bar...@asu.edu >>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>> >>>>>>> I'm pretty sure this happened when I installed developer tools 11.5 >>>>>>> >>>>>>> I want to make sure that anyone using the binaries can do so without >>>>>>> having to separately install any dependencies. So I'll see what happens >>>>>>> if I just include svn in the app. I will need to test on a system that >>>>>>> suffers from this lack. >>>>>>> >>>>>>> Michael >>>>>>> ____________________ >>>>>>> C. Michael Barton >>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>>> Sciences >>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>> Arizona State University >>>>>>> >>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, >>>>>>> https://complexity.asu.edu/csdc' >>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>>> On Aug 4, 2020, at 11:56 AM, Steven Pawley <dr.stevenpaw...@gmail.com >>>>>>>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>>>>>>> >>>>>>>> Hi Michael, >>>>>>>> >>>>>>>> Right, I do have svn installed via Homebrew (I get 'Type 'svn help' >>>>>>>> for usage.’), so that probably explains why g.extension works for me >>>>>>>> overall, apart from the issue with finding the MacOS SDK. >>>>>>>> >>>>>>>> Steve >>>>>>>> >>>>>>>>> On Aug 4, 2020, at 11:27 AM, Michael Barton <michael.bar...@asu.edu >>>>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>>>> >>>>>>>>> Steven, >>>>>>>>> >>>>>>>>> What happens if you open a terminal window and type 'svn' followed by >>>>>>>>> a return? >>>>>>>>> >>>>>>>>> Michael >>>>>>>>> ____________________ >>>>>>>>> C. Michael Barton >>>>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>>>>> Sciences >>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>>>> Arizona State University >>>>>>>>> >>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=6KybHpYJMo7V86xk_1VxAmD-_UolxXaQfLvYShRFgpk&e=>, >>>>>>>>> https://complexity.asu.edu/csdc' >>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=abWZQP3dzmM5KTmBUXPwvqbzQUlMgfhQzUGEr0HevTo&e=> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>>> On Aug 3, 2020, at 6:53 PM, Steven Pawley <dr.stevenpaw...@gmail.com >>>>>>>>>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>>>>>>>>> >>>>>>>>>> Perhaps a different issue, but I can install extensions, but only >>>>>>>>>> pure python-based extensions. Anything that requires compilation of >>>>>>>>>> C code fails. >>>>>>>>>> >>>>>>>>>> For example, when using the latest GRASS GIS binary (7.9, 25th July >>>>>>>>>> 2020 build), this works with r.texture.tiled: >>>>>>>>>> >>>>>>>>>> Fetching <r.texture.tiled> from GRASS GIS Addons repository (be >>>>>>>>>> patient)... >>>>>>>>>> Compiling... >>>>>>>>>> Installing... >>>>>>>>>> Updating extensions metadata file... >>>>>>>>>> Updating extension modules metadata file... >>>>>>>>>> Installation of <r.texture.tiled> successfully finished >>>>>>>>>> >>>>>>>>>> But for example, r.fill.gaps does not: >>>>>>>>>> >>>>>>>>>> g.extension extension=r.fill.gaps >>>>>>>>>> >>>>>>>>>> Fetching <r.fill.gaps> from GRASS GIS Addons repository (be >>>>>>>>>> patient)... >>>>>>>>>> Compiling... >>>>>>>>>> clang-10: warning: no such sysroot directory: >>>>>>>>>> '/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot] >>>>>>>>>> cell_funcs.c:21:10: fatal error: 'math.h' file not found >>>>>>>>>> #include <math.h> >>>>>>>>>> ^~~~~~~~ >>>>>>>>>> 1 error generated. >>>>>>>>>> make: *** [OBJ.x86_64-apple-darwin19.5.0/cell_funcs.o] Error >>>>>>>>>> 1 >>>>>>>>>> ERROR: Compilation failed, sorry. Please check above error messages. >>>>>>>>>> >>>>>>>>>> The 7.9-dev build throws an error because it appears to be still >>>>>>>>>> looking for components based on your system, specifically.,The 7.8.4 >>>>>>>>>> binary (16th July 2020 build) also throws the same error. I’m >>>>>>>>>> running the MacOS 10.15.6. >>>>>>>>>> >>>>>>>>>> Steve >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> On Aug 2, 2020, at 4:44 PM, Michael Barton <michael.bar...@asu.edu >>>>>>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>>>>>> >>>>>>>>>>> I just learned yesterday, when I tried to install something from >>>>>>>>>>> g.extension that: >>>>>>>>>>> >>>>>>>>>>> 1. g.extension uses svn to download packages, and >>>>>>>>>>> 2. Apple stopped including svn with the current OS (10.15.x) and >>>>>>>>>>> its developer tools >>>>>>>>>>> >>>>>>>>>>> I don't know if anyone else has run into this yet, but it could be >>>>>>>>>>> an increasingly sticky issue going forward. Unless there are plans >>>>>>>>>>> to change how g.extension gets packages, I suppose I need to >>>>>>>>>>> include it in the Mac app bundle. >>>>>>>>>>> >>>>>>>>>>> Has anyone else hit this yet? >>>>>>>>>>> >>>>>>>>>>> Michael >>>>>>>>>>> ____________________ >>>>>>>>>>> C. Michael Barton >>>>>>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>>>>>>> Sciences >>>>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>>>>>> Arizona State University >>>>>>>>>>> >>>>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=wLo54OaOggTCfa9dMnza-vU7d8tllnb8G9z7MW3tF38&e=>, >>>>>>>>>>> https://complexity.asu.edu/csdc' >>>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=-cLS2YOXOnAMIbnQqtJQAbmXsjh9CVUVr2PzI6yj6FE&e=> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> grass-dev mailing list >>>>>>>>>>> grass-dev@lists.osgeo.org <mailto:grass-dev@lists.osgeo.org> >>>>>>>>>>> https://lists.osgeo.org/mailman/listinfo/grass-dev >>>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__lists.osgeo.org_mailman_listinfo_grass-2Ddev&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=4UVbmUdiztW2twuvUPIEUWiez0RLGyHRTdL0TV5DVfw&e=> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
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