Hi sxn, I would argue that that method for reverse transformation is largely obsolete. Please have a look at http://www.cgmartini.nl/cgmartini/index.php/back
Cheers, Tsjerk On Thu, May 22, 2014 at 4:26 PM, shivangi nangia <shivangi.nan...@gmail.com>wrote: > Hello, > > I want to do a reverse transformation of my system containing: bi-layer, > protein and water. > > The Martini website ( > http://md.chem.rug.nl/cgmartini/index.php/reverse-transformation) says to > install gromacs version 3.3.1 > > I am currently using 4.6.1 gromacs version. > > ques A: Is this version incapable of the transformation? > > Also, the martini website says to: > > *"1. Unpack the rev_trans.tar.gz in the MARTINITUTORIAL directory that > contains all necessary gromacs files for this exercise.* > > *2. Compile and/or source the modifi ed version of gromacs (remember this > tool is based upon gromacs version 3.3.1 and needs the corresponding tricks > and threats to be compiled.)* > > *source /where-ever-you-installed-it/gromacs-3.3.1/bin/GMXRC"* > > > ques B:On performing untar on rev_trans.tar.gz there is no MARTINITUTORIAL > directory > ques C: On performing untar on gmx_rev.tar.gz there is no bin folder > > KIndly help. > > Thanks, > sxn > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Tsjerk A. Wassenaar, Ph.D. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.