Dear Justin,
thanks for your reply. I really dont know how to create
the .itp file from the .pdb file of the TMA cation. Do I need a topology
builder? After making the .itp file, how should I proceed? If I have to add
it by genion, then I guess the tma.itp must be a part of the ions.itp file
of the forcefield directory, right?
Please elaborate.
Regards,
Soumadwip
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