Dear All, I am trying to convert my mol2 file to amber99sb itp to do MD by gromacs. but, when I use ACPYPE software, it run and never finished. my mol2 file is pluronic F127 and contains 2500 atoms. this structure is a polymer and huge in size. how can I get an itp file for my polymer? How can I simulate it in MD by gromacs? do polymers have some tricks?
the molecular structure of f127 is: A99B67A99 where A: ethylene oxide B: propylene oxide best regards, -- *********************************************** sako mirzaie PhD in biochemistry -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
