---------- Forwarded message ---------- From: SAKO MIRZAIE <sako.bioc...@gmail.com> Date: Fri, 3 Jun 2016 20:04:49 +0430 Subject: top parameters for pluronic f127 To: gromacs.org_gmx-users@maillist.sys.kth.se
Dear All, I am trying to convert my mol2 file to amber99sb itp to do MD by gromacs. but, when I use ACPYPE software, it run and never finished. my mol2 file is pluronic F127 and contains 2500 atoms. this structure is a polymer and huge in size. how can I get an itp file for my polymer? How can I simulate it in MD by gromacs? do polymers have some tricks? the molecular structure of f127 is: A99B67A99 where A: ethylene oxide B: propylene oxide best regards, -- *********************************************** sako mirzaie PhD in biochemistry -- *********************************************** sako mirzaie PhD in biochemistry, science faculty, Islamic azad university of sanandaj, sanandaj, Iran http://www.iausdj.ac.ir/fa/fa-info.aspx?p=s.mirzaie http://www.iausdj.ac.ir/en/en.aspx?p=s.mirzaie http://scholar.google.com/citations?user=viwZvVAAAAAJ&hl=en http://www.scopus.com/authid/detail.url?authorId=54886431500 http://www.ncbi.nlm.nih.gov/pubmed/?term=sako+mirzaie https://www.researchgate.net/profile/Sako_Mirzaie/publications/ -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
