Dear All, I would be grateful if you could help me with links to relevant papers/websites/sources on how to interpret RMSD matrices when comparing all frames of single trajectory to reference structure and also when comparing two different trajectories.
I am taking the reference structure from the input .tpr file. What in your opinion, is a better option to compare when taking RMSD? The starting structure .gro file or the .tpr file(after equilibration) ? Yours sincerely Apramita -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
