Hi, I suggest you decide what you want to observe before choosing a tool to observe with :-) A telescope is no good for micro-organisms.
Mark On Fri, 2 Jun 2017 17:20 Apramita Chand <apramita.ch...@gmail.com> wrote: > Dear All, > I would be grateful if you could help me with links to relevant > papers/websites/sources on how to interpret RMSD matrices when comparing > all frames of single trajectory to reference structure and also when > comparing two different trajectories. > > I am taking the reference structure from the input .tpr file. What in your > opinion, is a better option to compare when taking RMSD? The starting > structure .gro file or the .tpr file(after equilibration) ? > > > Yours sincerely > Apramita > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.