You do something wrong. How you solvate?Try something like this:
gmx solvate -cp my_system.gro -cs spc216.gro -o my_system_solv.gro -p topol.top
On Monday, October 30, 2017, 10:41:31 AM GMT+2, Aishwarya Smriti
<smritiaishwary...@gmail.com> wrote:
Hi!
I'm trying to solvate a system of a CNT and a protein molecule. My updated
topology file shows 106275 new solvent molecules added but the .gro file
has only coordinates for 6197 new molecules. I'm using SPC model for
solvating, Please help.
Regards,
Aishwarya Smriti
Senior Undergraduate
Chemical Engineering
Indian Institute of Technology, Delhi
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