Hi, The most likely scenario is that you are looking at a gro file that is not the one that was written by the solvation tool.
Mark On Mon, Oct 30, 2017 at 9:41 AM Aishwarya Smriti < smritiaishwary...@gmail.com> wrote: > Hi! > > I'm trying to solvate a system of a CNT and a protein molecule. My updated > topology file shows 106275 new solvent molecules added but the .gro file > has only coordinates for 6197 new molecules. I'm using SPC model for > solvating, Please help. > > Regards, > Aishwarya Smriti > Senior Undergraduate > Chemical Engineering > Indian Institute of Technology, Delhi > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
