I modified the specbond.dat and change the cutoff to be 2.04A, still nothing...
On Sun, Jan 21, 2018 at 10:23 AM, MD <refm...@gmail.com> wrote: > I have also tried renaming my two CYS to be CYS2 but no luck either. > > On Sun, Jan 21, 2018 at 10:22 AM, MD <refm...@gmail.com> wrote: > >> gromacs did ask me to confirm linking the two cys before the run, but I >> didn't see any log saying the bond is formed. >> >> On Sun, Jan 21, 2018 at 10:19 AM, MD <refm...@gmail.com> wrote: >> >>> Hi Gromacs folks, >>> I realized I kept losing disulfide bond after gmx. The length is 2.01A >>> but I did use -ss when pdb2gmx. Any thoughts? >>> Thanks, >>> Ming >>> >> >> > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
