Hi, Actually, I want to calculate the lattice parameter (distance between two cylinders) of hexagonal phase. Appreciate, if you could help me.
Thank you. On Sat, Aug 11, 2018 at 11:11 PM Mark Abraham <mark.j.abra...@gmail.com> wrote: > Hi, > > A center is a point. I don't see how you would define a central point of an > infinite cylinder. > > Mark > > On Sat, Aug 11, 2018, 14:47 Shan Jayasinghe <shanjayasinghe2...@gmail.com> > wrote: > > > Hi, > > > > I'm sorry for not providing the detail description of my system. Actually > > it is a hexagonal phase. Therefore, four cylindrical micelles can be seen > > in a cell. I want to calculate the center to center distance of two > > cylindrical micelles. > > > > On Sat, Aug 11, 2018 at 8:35 PM Mark Abraham <mark.j.abra...@gmail.com> > > wrote: > > > > > Hi, > > > > > > There is an axis of each cylinder but the two won't be parallel so > there > > is > > > no unique distance to measure. So I suggest thinking carefully about > what > > > you really want. > > > > > > Mark > > > > > > On Sat, Aug 11, 2018, 06:58 Shan Jayasinghe < > > shanjayasinghe2...@gmail.com> > > > wrote: > > > > > > > Hi, > > > > > > > > I tried to used gmx distance. However, I don't understand how can I > > > define > > > > the center of the circle face of the cylinder to the same in the > other > > > > cylindrical micelle. > > > > > > > > Can anyone help me? > > > > Thank you. > > > > > > > > > > > > On Sat, Aug 11, 2018 at 9:33 AM Mark Abraham < > mark.j.abra...@gmail.com > > > > > > > wrote: > > > > > > > > > Hi, > > > > > > > > > > Have you looked at the different tools available and considered > what > > > > might > > > > > be useful for you? > > > > > > > > > > Mark > > > > > > > > > > On Fri, Aug 10, 2018, 07:34 Shan Jayasinghe < > > > > shanjayasinghe2...@gmail.com> > > > > > wrote: > > > > > > > > > > > Dear Gromacs Users, > > > > > > > > > > > > I want to calculate the center to center distance of two > > cylindrical > > > > > > micelles in my simulation. What gmx command should I use to > > calculate > > > > the > > > > > > distance? Can anyone help me? > > > > > > > > > > > > Thank you. > > > > > > -- > > > > > > Gromacs Users mailing list > > > > > > > > > > > > * Please search the archive at > > > > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List > before > > > > > > posting! > > > > > > > > > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > > > > > > > * For (un)subscribe requests visit > > > > > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > > > or > > > > > > send a mail to gmx-users-requ...@gromacs.org. > > > > > > > > > > > -- > > > > > Gromacs Users mailing list > > > > > > > > > > * Please search the archive at > > > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > > > > posting! > > > > > > > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > > > > > * For (un)subscribe requests visit > > > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > > or > > > > > send a mail to gmx-users-requ...@gromacs.org. > > > > > > > > > > > > > > > > > -- > > > > Best Regards > > > > Shan Jayasinghe > > > > -- > > > > Gromacs Users mailing list > > > > > > > > * Please search the archive at > > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > > > posting! > > > > > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > > > * For (un)subscribe requests visit > > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > or > > > > send a mail to gmx-users-requ...@gromacs.org. > > > > > > > -- > > > Gromacs Users mailing list > > > > > > * Please search the archive at > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > > posting! > > > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > * For (un)subscribe requests visit > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > > send a mail to gmx-users-requ...@gromacs.org. > > > > > > > > > -- > > Best Regards > > Shan Jayasinghe > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Best Regards Shan Jayasinghe -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.