Hello GROMACS users,
I am a first time user of GROMACS. According to this excellent tutorial (http://www.mdtutorials.com/gmx/lysozyme/01_pdb2gmx.html), I downloaded the PDB file for lyzozyme, then removed water molecules, typed in the following command on CygwinShell (with GROMACS activated). $ gmx pdb2gmx -f 1AKI_clean.pdb -o 1AKI_processed.gro -water spce However, I get an error saying: In command line option -f, file 1AKI_clean.pdb does not exit or is not accessible. Please advice where am I going wrong. Any insight would be appreciated. Many thanks, Neena Eappen Graduate Student Jockusch Lab<http://www.chem.utoronto.ca/wp/jockusch/>, U of T -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
