What ever version you use if the file is not present in your working directory ..it will give the same error
On Fri, Nov 2, 2018, 9:18 PM Benson Muite <[email protected]> wrote: > What version of GROMACS are you using? > > On 11/2/18 5:45 PM, Neena Susan Eappen wrote: > > Hello GROMACS users, > > > > > > I am a first time user of GROMACS. According to this excellent tutorial ( > http://www.mdtutorials.com/gmx/lysozyme/01_pdb2gmx.html), I downloaded > the PDB file for lyzozyme, then removed water molecules, typed in the > following command on CygwinShell (with GROMACS activated). > > > > $ gmx pdb2gmx -f 1AKI_clean.pdb -o 1AKI_processed.gro -water spce > > > > However, I get an error saying: > > > > In command line option -f, file 1AKI_clean.pdb does not exit or is not > accessible. > > > > Please advice where am I going wrong. Any insight would be appreciated. > > > > Many thanks, > > > > Neena Eappen > > Graduate Student > > Jockusch Lab<http://www.chem.utoronto.ca/wp/jockusch/>, U of T > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
