Download and use the forcefield files from the ATB server website, and then make that you correctly point to it in your top file.
On Sat, 14 Mar. 2020, 7:32 pm FAISAL NABI, <fn...@myamu.ac.in> wrote: > Hi, > I have been a new user and i was following the protein-ligand complex > tutorial for MD. I have used GROMOS96 54a7 FF and to build ligand topology > i have used ATB webserver. I did download the .itp and .pdb file from there > and converted that to .gro file. The problem i am facing is it shows an > error while i add ions that "Atomtype CAro not found", although i have > added the atomtypes in the gromacs topology file still it's showing the > same error. I request if somebody could provie me a stepwise protocol i > could follow. > > Thank you > > -- > > Faisal Nabi > > *Pre-Doctoral Fellow (CSIR-JRF)* > C/o Professor Rizwan Hassan Khan > Interdisciplinary Biotechnology Unit, > Aligarh Muslim University, Aligarh, UP, INDIA. > Email- *fn...@myamy.ac.in <fn...@myamy.ac.in>* > * faisalbioc...@gmail.com <faisalbioc...@gmail.com>* > Contact no. - *+91-8923713214* > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
