Hi Magnus and Justin,
Am 23.03.20 um 13:52 schrieb Magnus Lundborg:
> Hi Jochen,
>
> Have you tested if this happens with -update cpu? Perhaps it's the
bonded on GPU that's the problem, unrelated to updating.
The problem only appears with -update gpu, not with -update cpu.
I didn't see a
> Redmine issue yet. Could you make one?
I tried, but I seem to lack permissions: On
https://redmine.gromacs.org/projects/gromacs/issues/new
I get "You are not authorized to access this page." Did I miss something
here?
Thanks,
Jochen
Am 23.03.20 um 13:52 schrieb Magnus Lundborg:
Hi Jochen,
Have you tested if this happens with -update cpu? Perhaps it's the
bonded on GPU that's the problem, unrelated to updating. I didn't see a
Redmine issue yet. Could you make one?
Cheers,
Magnus
On 2020-03-19 18:01, Jochen Hub wrote:
Hi developers,
I am running a simple DPPC membrane (Berger force field, PME, 1nm
cutoff, 4fs time step, all standard) with 2020.1 and
comm-mode = Linear
nstcomm = 100
comm-grps = DPPC water ; OR System
but the membrane rapidly drifts along the z direction: approx. once
across the box per 100ps, and accelerating over time.
This happens only with
mdrun -update gpu -bonded gpu
but not with
mdrun -update gpu -bonded cpu (no spelling mistake)
(with a GTX 1070Ti).
Also no problems with 2018.6 or 2019.6.
Seems like the center of mass motion removal is broken when doing both
*bonded and updating* on the GPU. Is this issue known?
Cheers,
Jochen
--
---------------------------------------------------
Prof. Dr. Jochen Hub
Theoretical Biophysics Group
Department of Physics, Saarland University
Campus E2 6, Zi. 4.11, 66123 Saarbruecken, Germany
Phone: +49 (0)681 302-2740
https://biophys.uni-saarland.de/
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