gromacs.org_gmx-users
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Re: [gmx-users] gmx genconf
Alessandra Villa
[gmx-users] Hydrogen bonding criteria in Gromacs
Pandya, Akash
Re: [gmx-users] Hydrogen bonding criteria in Gromacs
Quyen V. Vu
Re: [gmx-users] Hydrogen bonding criteria in Gromacs
Justin Lemkul
Re: [gmx-users] Hydrogen bonding criteria in Gromacs
Myunggi Yi
Re: [gmx-users] Hydrogen bonding criteria in Gromacs
Justin Lemkul
Re: [gmx-users] Hydrogen bonding criteria in Gromacs
Myunggi Yi
[gmx-users] Umbrella sampling with restraint on the center of mass of ligand
gmx user1
Re: [gmx-users] Umbrella sampling with restraint on the center of mass of ligand
Justin Lemkul
[gmx-users] Regarding high RMSD
Ashma Khan
Re: [gmx-users] Regarding high RMSD
Alessandra Villa
[gmx-users] Regarding high RMSD
Ashma Khan
Re: [gmx-users] Regarding high RMSD
Alessandra Villa
Re: [gmx-users] Regarding high RMSD
Ashma Khan
Re: [gmx-users] Regarding high RMSD
Justin Lemkul
[gmx-users] Error: Cannot find AVX 512F compiler flag
Shlomit Afgin
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Szilárd Páll
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Shlomit Afgin
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Mark Abraham
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Shlomit Afgin
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Schulz, Roland
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Tru Huynh
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Mark Abraham
Re: [gmx-users] Error: Cannot find AVX 512F compiler flag
Shlomit Afgin
[gmx-users] A list of missing interactions
Sadaf Rani
[gmx-users] Fwd: A list of missing interactions
Sadaf Rani
Re: [gmx-users] A list of missing interactions
Alessandra Villa
[gmx-users] Calculating C-alpha RMSD for coarse grained simulation
Rabeta Yeasmin
Re: [gmx-users] Calculating C-alpha RMSD for coarse grained simulation
Bhupendra Dandekar
[gmx-users] cut-off scheme
Dhrubajyoti Maji
Re: [gmx-users] cut-off scheme
Alessandra Villa
Re: [gmx-users] cut-off scheme
Dhrubajyoti Maji
[gmx-users] Troubleshooting Error Message: Invalid Index Group References
Travis Meyer
Re: [gmx-users] Troubleshooting Error Message: Invalid Index Group References
Alessandra Villa
Re: [gmx-users] Troubleshooting Error Message: Invalid Index Group References
Travis Meyer
[gmx-users] inter-chain disulfide bridges
HERNANDEZ ALBA Oscar (IPHC)
Re: [gmx-users] charmm gui pdb to gro
Yogesh Sharma
[gmx-users] charmm gui pdb to gro.
Yogesh Sharma
Re: [gmx-users] charmm gui pdb to gro.
Sahil Lall
[gmx-users] Loading topology into vmd
Miro Astore
Re: [gmx-users] Loading topology into vmd
Kenny Goossens
Re: [gmx-users] Loading topology into vmd
Miro Astore
Re: [gmx-users] Loading topology into vmd
Alessandra Villa
Re: [gmx-users] Loading topology into vmd
Miro Astore
[gmx-users] Number of bins for wham and umbrella sampling / PMF
Andreas Mecklenfeld
[gmx-users] com motion and position restraints may cause artifacts
Christos Deligkaris
Re: [gmx-users] com motion and position restraints may cause artifacts
Alessandra Villa
Re: [gmx-users] com motion and position restraints may cause artifacts
Justin Lemkul
Re: [gmx-users] com motion and position restraints may cause artifacts
Christos Deligkaris
Re: [gmx-users] com motion and position restraints may cause artifacts
Berk Hess
Re: [gmx-users] com motion and position restraints may cause artifacts
Justin Lemkul
[gmx-users] cannot load the xtc file (without PBC) to VMD
Lalehan Ozalp
Re: [gmx-users] cannot load the xtc file (without PBC) to VMD
Justin Lemkul
Re: [gmx-users] cannot load the xtc file (without PBC) to VMD
spss4
Re: [gmx-users] cannot load the xtc file (without PBC) to VMD
Lalehan Ozalp
Re: [gmx-users] cannot load the xtc file (without PBC) to VMD
spss4
Re: [gmx-users] cannot load the xtc file (without PBC) to VMD
Lalehan Ozalp
[gmx-users] Cut off (1.2 -1.5 nm) with OPLS forcefield
Pragati Sharma
Re: [gmx-users] Cut off (1.2 -1.5 nm) with OPLS forcefield
Alessandra Villa
[gmx-users] solute tempering (REST2)
hind ahmed
Re: [gmx-users] solute tempering (REST2)
Nicolas Cheron
[gmx-users] Query regarding do_dssp program
Sundari
Re: [gmx-users] Query regarding do_dssp program
Alessandra Villa
Re: [gmx-users] Query regarding do_dssp program
Sundari
Re: [gmx-users] Query regarding do_dssp program
Justin Lemkul
Re: [gmx-users] Query regarding do_dssp program
Sundari
Re: [gmx-users] Query regarding do_dssp program
Justin Lemkul
Re: [gmx-users] Query regarding do_dssp program
Sundari
Re: [gmx-users] Query regarding do_dssp program
Justin Lemkul
[gmx-users] How to find free energy barrier from FEL which generated from dPCA?
Seera Suryanarayana
[gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers
Cardenas, Alfredo E
Re: [gmx-users] Need help with installation of Gromacs-2019.3 with Intell compilers
Schulz, Roland
[gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests
João M . Damas
Re: [gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests
Mark Abraham
Re: [gmx-users] Building full GROMACS and mdrun only with MPI and GPU: FFTW and regression tests
João M . Damas
[gmx-users] Protein breaking apart in implicit solvent MD simulations using GROMACS
Baswanth Oruganti
[gmx-users] Which content is in gmx wham -hist output file?
변진영
Re: [gmx-users] Which content is in gmx wham -hist output file?
shakira shukoor
Re: [gmx-users] Which content is in gmx wham -hist output file?
변진영
Re: [gmx-users] Which content is in gmx wham -hist output file?
shakira shukoor
[gmx-users] gmx_topolbuild error
aayattimg
Re: [gmx-users] gmx_topolbuild error
Alessandra Villa
[gmx-users] Lipids running out of simulation box
徐以会
[gmx-users] CfP EuroVis 2020 Workshop on Molecular Graphics and Visual Analysis of Molecular Data
Björn Sommer
[gmx-users] Visualize replica exchange
hind ahmed
Re: [gmx-users] Visualize replica exchange
Christian Blau
[gmx-users] Replica exchange probabilities and extend simulation
hind ahmed
Re: [gmx-users] Replica exchange probabilities and extend simulation
Christian Blau
[gmx-users] charting Ligand's movement in the binding pocket
Prasanth G, Research Scholar
Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 189, Issue 18
Mijiddorj B
[gmx-users] Comparing the RMSD of an in silico variant to a crystal structure.
Matthew Fisher
Re: [gmx-users] Comparing the RMSD of an in silico variant to a crystal structure.
Bratin Kumar Das
Re: [gmx-users] Comparing the RMSD of an in silico variant to a crystal structure.
Justin Lemkul
[gmx-users] is GPU peer access(RDMA) supported with inter-node and gmx2020 mpi version?
Jimmy Chen
Re: [gmx-users] is GPU peer access(RDMA) supported with inter-node and gmx2020 mpi version?
Szilárd Páll
Re: [gmx-users] CMAP format on GROMACS
Marcelo Depólo
Re: [gmx-users] CMAP format on GROMACS
Justin Lemkul
[gmx-users] Vibrational spectra of amide I using gromacs
Mijiddorj B
Re: [gmx-users] Vibrational spectra of amide I using gromacs
André Farias de Moura
Re: [gmx-users] Vibrational spectra of amide I using gromacs
Mijiddorj B
Re: [gmx-users] Vibrational spectra of amide I using gromacs
André Farias de Moura
Re: [gmx-users] Vibrational spectra of amide I using gromacs
Mijiddorj B
[gmx-users] Is minimization and equilibration needed for umbrella sampling?
Qing Lv
Re: [gmx-users] Is minimization and equilibration needed for umbrella sampling?
Justin Lemkul
Re: [gmx-users] Is minimization and equilibration needed for umbrella sampling?
Qing Lv
Re: [gmx-users] Is minimization and equilibration needed for umbrella sampling?
Justin Lemkul
[gmx-users] Error bar for umbrella sampling?
Qing Lv
Re: [gmx-users] Error bar for umbrella sampling?
Quyen V. Vu
Re: [gmx-users] Error bar for umbrella sampling?
Александр Лашков
Re: [gmx-users] Error bar for umbrella sampling?
Qing Lv
Re: [gmx-users] Error bar for umbrella sampling?
shakira shukoor
[gmx-users] how to set system for absolute free enegy calculation of ligand in protein
Sadaf Rani
[gmx-users] system has non zero net charge
Yogesh Sharma
Re: [gmx-users] system has non zero net charge
Gudrun Gygli
Re: [gmx-users] system has non zero net charge
Justin Lemkul
[gmx-users] Position restrains calculation of virial
Johannes Hermann
Re: [gmx-users] Position restrains calculation of virial
Alessandra Villa
[gmx-users] cant compute msd
Devargya Chakraborty
Re: [gmx-users] cant compute msd
Christian Blau
Re: [gmx-users] cant compute msd
Devargya Chakraborty
[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Navneet Kumar
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Navneet Kumar
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Christian Blau
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Navneet Kumar
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Justin Lemkul
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Navneet Kumar
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Justin Lemkul
Re: [gmx-users] Index group for Backbone/C-alpha of specific stretch of residues
Navneet Kumar
[gmx-users] Make index command in gromacs
Shan Jayasinghe
Re: [gmx-users] Make index command in gromacs
Alessandra Villa
Re: [gmx-users] Make index command in gromacs
Christian Blau
Re: [gmx-users] Make index command in gromacs
Shan Jayasinghe
[gmx-users] CMAP format on GROMCACS
Marcelo Depólo
Re: [gmx-users] CMAP format on GROMCACS
Justin Lemkul
[gmx-users] gmx covar error in gromacs2019.x
008
[gmx-users] Simulated Annealing command line
Neena Susan Eappen
Re: [gmx-users] Simulated Annealing command line
Kenny Goossens
Re: [gmx-users] Simulated Annealing command line
Neena Susan Eappen
Re: [gmx-users] Simulated Annealing command line
Justin Lemkul
Re: [gmx-users] Simulated Annealing command line
Neena Susan Eappen
Re: [gmx-users] Simulated Annealing command line
Justin Lemkul
[gmx-users] GROMOS forcefields
shakira shukoor
Re: [gmx-users] GROMOS forcefields
Kenny Goossens
Re: [gmx-users] GROMOS forcefields
Justin Lemkul
Re: [gmx-users] GROMOS forcefields
Navneet Kumar
Re: [gmx-users] GROMOS forcefields
shakira shukoor
[gmx-users] The pull code
Majid Rezaei
[gmx-users] query regarding center of mass removal
Snehasis Chatterjee
Re: [gmx-users] query regarding center of mass removal
Justin Lemkul
Re: [gmx-users] query regarding center of mass removal
Snehasis Chatterjee
Re: [gmx-users] query regarding center of mass removal
Justin Lemkul
[gmx-users] Bilayer exploding with semiisotropic coupling
Namit Chaudhary
Re: [gmx-users] Bilayer exploding with semiisotropic coupling
Namit Chaudhary
Re: [gmx-users] Bilayer exploding with semiisotropic coupling
Kevin Boyd
Re: [gmx-users] Bilayer exploding with semiisotropic coupling
Paul Bauer
Re: [gmx-users] Bilayer exploding with semiisotropic coupling
Namit Chaudhary
[gmx-users] Position restrain and other error while doing simulation
Navneet Kumar
Re: [gmx-users] Position restrain and other error while doing simulation
Quyen V. Vu
Re: [gmx-users] Position restrain and other error while doing simulation
Navneet Kumar
[gmx-users] Atomic/residue fluctuations in z direction
Pradeepa Kumari
Re: [gmx-users] Atomic/residue fluctuations in z direction
Justin Lemkul
[gmx-users] Extending simulation
Shradheya R.R. Gupta
Re: [gmx-users] Extending simulation
Naveen BK
[gmx-users] compressibility values in coarse grained simulations
Deepanshi .
Re: [gmx-users] compressibility values in coarse grained simulations
Dallas Warren
[gmx-users] compressibility values in coarse grained simulations
Deepanshi .
Re: [gmx-users] compressibility values in coarse grained simulations
Alessandra Villa
[gmx-users] specific heat calculation using "gmx dos"
Pragati Sharma
Re: [gmx-users] specific heat calculation using "gmx dos"
Christian Blau
[gmx-users] nrexcl value for ions
Dhrubajyoti Maji
Re: [gmx-users] nrexcl value for ions
Justin Lemkul
Re: [gmx-users] nrexcl value for ions
Dhrubajyoti Maji
[gmx-users] molecule breakage during minimization
Yogesh Sharma
Re: [gmx-users] molecule breakage during minimization
Dallas Warren
[gmx-users] Gromacs 2019 - Ryzen Architecture
Sandro Wrzalek
Re: [gmx-users] Gromacs 2019 - Ryzen Architecture
Paul bauer
Re: [gmx-users] Gromacs 2019 - Ryzen Architecture
Kevin Boyd
Re: [gmx-users] Gromacs 2019 - Ryzen Architecture
Szilárd Páll
[gmx-users] lifetime of hydrogen bond
spss4
Re: [gmx-users] lifetime of hydrogen bond
David van der Spoel
Re: [gmx-users] lifetime of hydrogen bond
spss4
[gmx-users] GROMACS 2020 official release
Paul bauer
Re: [gmx-users] GROMACS 2020 official release
Paul bauer
[gmx-users] [gmx-user] coordinates mismatch error
Quin K
Re: [gmx-users] [gmx-user] coordinates mismatch error
Quin K
Re: [gmx-users] [gmx-user] coordinates mismatch error
Justin Lemkul
Re: [gmx-users] [gmx-user] coordinates mismatch error
Quin K
[gmx-users] g_membed mdp file
Yogesh Sharma
Re: [gmx-users] g_membed mdp file
Hamid Zaree
Re: [gmx-users] g_membed mdp file
Yogesh Sharma
Re: [gmx-users] g_membed mdp file
Hamid Zaree
[gmx-users] What is the "gen-vel" used for?
sunyeping
Re: [gmx-users] What is the "gen-vel" used for?
Justin Lemkul
Re: [gmx-users] What is the "gen-vel" used for?
sunyeping
Re: [gmx-users] What is the "gen-vel" used for?
Justin Lemkul
Re: [gmx-users] What is the "gen-vel" used for?
Sun Yeping
Re: [gmx-users] What is the "gen-vel" used for?
Sun Yeping
Re: [gmx-users] What is the "gen-vel" used for?
Justin Lemkul
Re: [gmx-users] What is the "gen-vel" used for?
Sun Yeping
Re: [gmx-users] What is the "gen-vel" used for?
Justin Lemkul
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