Martin, I am kicking myself for not reading more... Sorry. Starting testing, didn't go in first time so tweaking with the rather adapted RHEL startup scripts for tomcat to get the environment variable exported.
Thank you for the steer. -Dougal On Mon, May 24, 2010 at 4:12 PM, Martin Feller <[email protected]> wrote: > Martin Feller wrote: >> Hi, >> >> I didn't try it, just an educated guess: >> Any chance you have the property -Dorg.globus.wsrf.container.persistence.dir >> set to /usr/share/tomcat5/.globus, e.g. via the environment variable >> GLOBUS_OPTIONS? >> (http://www.globus.org/toolkit/docs/4.0/common/javawscore/Java_WS_Core_Public_Interfaces.html#s-javawscore-Public_Interfaces-env) > > Oh, this was a 4.0 link, but it's the same in 4.2: > http://www.globus.org/toolkit/docs/4.2/4.2.1/admin/install/ > > >> If not: Does it work if you explicitly set it, like >> >> export GLOBUS_OPTIONS="$GLOBUS_OPTIONS >> -Dorg.globus.wsrf.container.persistence.dir=/where/ever/you/want/it/to/be" >> >> and restart tomcat? >> >> Martin >> >> Dougal Ballantyne wrote: >>> Hi, >>> >>> I have been working on a GT4.2.1 deployment and for larger scale >>> testing, I have been preparing for a deployment into the Tomcat 5.5 >>> server. I am working on a RHEL 5.5 system and would like to use the >>> provided tomcat5-* rpms. >>> >>> I have successfully deployed the application into the webapps folder >>> and adjusted the locations of the BDB databases and temporary storage >>> locations and it all works as expected. However there is one item I >>> just cannot seem to get relocated, the persisted directory created >>> under the user starting the container in ~/.globus/persisted. >>> >>> I am getting the following errors in catalina.out: >>> >>> Using CATALINA_BASE: /usr/share/tomcat5 >>> Using CATALINA_HOME: /usr/share/tomcat5 >>> Using CATALINA_TMPDIR: /usr/share/tomcat5/temp >>> Using JRE_HOME: >>> May 23, 2010 3:31:18 PM org.apache.catalina.core.ApplicationContext log >>> INFO: ContextListener: contextInitialized() >>> May 23, 2010 3:31:18 PM org.apache.catalina.core.ApplicationContext log >>> INFO: SessionListener: contextInitialized() >>> May 23, 2010 3:31:19 PM org.apache.commons.vfs.VfsLog info >>> INFO: Using "/usr/share/tomcat5/temp/vfs_cache" as temporary files store. >>> May 23, 2010 3:31:20 PM >>> org.globus.exec.service.factory.ManagedJobFactoryResource$RecoveryTask >>> run >>> WARNING: Recovery exception >>> org.globus.wsrf.ResourceException: Unabled to locate persisted >>> resource properties directory. ; nested exception is: >>> java.io.IOException: [JWSCORE-205] Failed to create storage >>> directory: >>> '/usr/share/tomcat5/.globus/persisted/127.0.0.1-wsrf/ManagedExecutableJobResourceStateType' >>> at >>> org.globus.exec.service.exec.ManagedExecutableJobHome.recover(ManagedExecutableJobHome.java:176) >>> at >>> org.globus.exec.service.factory.ManagedJobFactoryResource$RecoveryTask.run(ManagedJobFactoryResource.java:388) >>> at >>> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) >>> at >>> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) >>> at java.util.concurrent.FutureTask.run(FutureTask.java:138) >>> at >>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) >>> at >>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) >>> at >>> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) >>> at >>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) >>> at java.lang.Thread.run(Thread.java:619) >>> Caused by: java.io.IOException: [JWSCORE-205] Failed to create storage >>> directory: >>> '/usr/share/tomcat5/.globus/persisted/127.0.0.1-wsrf/ManagedExecutableJobResourceStateType' >>> at >>> org.globus.wsrf.utils.FilePersistenceHelper.createStorageDirectory(FilePersistenceHelper.java:123) >>> at >>> org.globus.wsrf.utils.FilePersistenceHelper.setStorageDirectory(FilePersistenceHelper.java:191) >>> at >>> org.globus.wsrf.utils.FilePersistenceHelper.<init>(FilePersistenceHelper.java:181) >>> at >>> org.globus.wsrf.utils.FilePersistenceHelper.<init>(FilePersistenceHelper.java:141) >>> at >>> org.globus.wsrf.utils.XmlPersistenceHelper.<init>(XmlPersistenceHelper.java:74) >>> at >>> org.globus.exec.service.exec.ManagedExecutableJobHome.recover(ManagedExecutableJobHome.java:171) >>> ... 9 more >>> >>> >>> I have searched through the source and the deployed application but I >>> can find no reference to where it might be getting this path from. >>> >>> [r...@globus-sge globus-4.2.1]# pwd >>> /opt/globus-4.2.1 >>> [r...@globus-sge globus-4.2.1]# grep -r '/.globus/persisted/' . >>> grep: warning: ./etc/gpt/packages/packages: recursive directory loop >>> >>> grep: warning: ./etc/globus_packages/packages: recursive directory loop >>> >>> ./SRC/gt4.2.1-all-source-installer/source-trees-thr/ws-gram/discovery/providers/setup/fork/globus-scheduler-provider-fork.in:my >>> @persistence_files = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> ./SRC/gt4.2.1-all-source-installer/source-trees-thr/ws-gram/discovery/providers/setup/pbs/globus-scheduler-provider-pbs.in:my >>> @persistence_files = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> ./SRC/gt4.2.1-all-source-installer/source-trees-thr/ws-gram/discovery/providers/setup/condor/globus-scheduler-provider-condor.in:my >>> @persistence_files = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> ./SRC/gt4.2.1-all-source-installer/source-trees/ws-gram/discovery/providers/setup/fork/globus-scheduler-provider-fork.in:my >>> @persistence_files = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> ./SRC/gt4.2.1-all-source-installer/source-trees/ws-gram/discovery/providers/setup/pbs/globus-scheduler-provider-pbs.in:my >>> @persistence_files = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> ./SRC/gt4.2.1-all-source-installer/source-trees/ws-gram/discovery/providers/setup/condor/globus-scheduler-provider-condor.in:my >>> @persistence_files = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> ./setup/globus/globus-scheduler-provider-fork.in:my @persistence_files >>> = >>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>> [r...@globus-sge globus-4.2.1]# >>> [r...@globus-sge globus-4.2.1]# cd /usr/share/tomcat5/webapps/wsrf/ >>> [r...@globus-sge wsrf]# >>> [r...@globus-sge wsrf]# grep -r '/.globus/persisted/' . >>> [r...@globus-sge wsrf]# >>> [r...@globus-sge wsrf]# >>> >>> Has anybody tried to update this before or familiar with changing this? >>> >>> Kind regards, >>> >>> Dougal >> > >
