Martin, I have got it working. I ended up having to add -Dorg.globus.wsrf.container.persistence.dir=/where/ever/you/want/it/to/be directly into the RHEL tomcat daemon start/stop script. It did not seem to be picking up GLOBUS_OPTIONS, no matter where I exported them. Might be a RHEL thing or I need to dig a bit further but at least I am able to change it.
Thank you. -Dougal On Mon, May 24, 2010 at 4:28 PM, Dougal Ballantyne <[email protected]> wrote: > Martin, I am kicking myself for not reading more... Sorry. > > Starting testing, didn't go in first time so tweaking with the rather > adapted RHEL startup scripts for tomcat to get the environment > variable exported. > > Thank you for the steer. > > -Dougal > > On Mon, May 24, 2010 at 4:12 PM, Martin Feller <[email protected]> wrote: >> Martin Feller wrote: >>> Hi, >>> >>> I didn't try it, just an educated guess: >>> Any chance you have the property -Dorg.globus.wsrf.container.persistence.dir >>> set to /usr/share/tomcat5/.globus, e.g. via the environment variable >>> GLOBUS_OPTIONS? >>> (http://www.globus.org/toolkit/docs/4.0/common/javawscore/Java_WS_Core_Public_Interfaces.html#s-javawscore-Public_Interfaces-env) >> >> Oh, this was a 4.0 link, but it's the same in 4.2: >> http://www.globus.org/toolkit/docs/4.2/4.2.1/admin/install/ >> >> >>> If not: Does it work if you explicitly set it, like >>> >>> export GLOBUS_OPTIONS="$GLOBUS_OPTIONS >>> -Dorg.globus.wsrf.container.persistence.dir=/where/ever/you/want/it/to/be" >>> >>> and restart tomcat? >>> >>> Martin >>> >>> Dougal Ballantyne wrote: >>>> Hi, >>>> >>>> I have been working on a GT4.2.1 deployment and for larger scale >>>> testing, I have been preparing for a deployment into the Tomcat 5.5 >>>> server. I am working on a RHEL 5.5 system and would like to use the >>>> provided tomcat5-* rpms. >>>> >>>> I have successfully deployed the application into the webapps folder >>>> and adjusted the locations of the BDB databases and temporary storage >>>> locations and it all works as expected. However there is one item I >>>> just cannot seem to get relocated, the persisted directory created >>>> under the user starting the container in ~/.globus/persisted. >>>> >>>> I am getting the following errors in catalina.out: >>>> >>>> Using CATALINA_BASE: /usr/share/tomcat5 >>>> Using CATALINA_HOME: /usr/share/tomcat5 >>>> Using CATALINA_TMPDIR: /usr/share/tomcat5/temp >>>> Using JRE_HOME: >>>> May 23, 2010 3:31:18 PM org.apache.catalina.core.ApplicationContext log >>>> INFO: ContextListener: contextInitialized() >>>> May 23, 2010 3:31:18 PM org.apache.catalina.core.ApplicationContext log >>>> INFO: SessionListener: contextInitialized() >>>> May 23, 2010 3:31:19 PM org.apache.commons.vfs.VfsLog info >>>> INFO: Using "/usr/share/tomcat5/temp/vfs_cache" as temporary files store. >>>> May 23, 2010 3:31:20 PM >>>> org.globus.exec.service.factory.ManagedJobFactoryResource$RecoveryTask >>>> run >>>> WARNING: Recovery exception >>>> org.globus.wsrf.ResourceException: Unabled to locate persisted >>>> resource properties directory. ; nested exception is: >>>> java.io.IOException: [JWSCORE-205] Failed to create storage >>>> directory: >>>> '/usr/share/tomcat5/.globus/persisted/127.0.0.1-wsrf/ManagedExecutableJobResourceStateType' >>>> at >>>> org.globus.exec.service.exec.ManagedExecutableJobHome.recover(ManagedExecutableJobHome.java:176) >>>> at >>>> org.globus.exec.service.factory.ManagedJobFactoryResource$RecoveryTask.run(ManagedJobFactoryResource.java:388) >>>> at >>>> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) >>>> at >>>> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) >>>> at java.util.concurrent.FutureTask.run(FutureTask.java:138) >>>> at >>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) >>>> at >>>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) >>>> at >>>> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) >>>> at >>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) >>>> at java.lang.Thread.run(Thread.java:619) >>>> Caused by: java.io.IOException: [JWSCORE-205] Failed to create storage >>>> directory: >>>> '/usr/share/tomcat5/.globus/persisted/127.0.0.1-wsrf/ManagedExecutableJobResourceStateType' >>>> at >>>> org.globus.wsrf.utils.FilePersistenceHelper.createStorageDirectory(FilePersistenceHelper.java:123) >>>> at >>>> org.globus.wsrf.utils.FilePersistenceHelper.setStorageDirectory(FilePersistenceHelper.java:191) >>>> at >>>> org.globus.wsrf.utils.FilePersistenceHelper.<init>(FilePersistenceHelper.java:181) >>>> at >>>> org.globus.wsrf.utils.FilePersistenceHelper.<init>(FilePersistenceHelper.java:141) >>>> at >>>> org.globus.wsrf.utils.XmlPersistenceHelper.<init>(XmlPersistenceHelper.java:74) >>>> at >>>> org.globus.exec.service.exec.ManagedExecutableJobHome.recover(ManagedExecutableJobHome.java:171) >>>> ... 9 more >>>> >>>> >>>> I have searched through the source and the deployed application but I >>>> can find no reference to where it might be getting this path from. >>>> >>>> [r...@globus-sge globus-4.2.1]# pwd >>>> /opt/globus-4.2.1 >>>> [r...@globus-sge globus-4.2.1]# grep -r '/.globus/persisted/' . >>>> grep: warning: ./etc/gpt/packages/packages: recursive directory loop >>>> >>>> grep: warning: ./etc/globus_packages/packages: recursive directory loop >>>> >>>> ./SRC/gt4.2.1-all-source-installer/source-trees-thr/ws-gram/discovery/providers/setup/fork/globus-scheduler-provider-fork.in:my >>>> @persistence_files = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> ./SRC/gt4.2.1-all-source-installer/source-trees-thr/ws-gram/discovery/providers/setup/pbs/globus-scheduler-provider-pbs.in:my >>>> @persistence_files = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> ./SRC/gt4.2.1-all-source-installer/source-trees-thr/ws-gram/discovery/providers/setup/condor/globus-scheduler-provider-condor.in:my >>>> @persistence_files = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> ./SRC/gt4.2.1-all-source-installer/source-trees/ws-gram/discovery/providers/setup/fork/globus-scheduler-provider-fork.in:my >>>> @persistence_files = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> ./SRC/gt4.2.1-all-source-installer/source-trees/ws-gram/discovery/providers/setup/pbs/globus-scheduler-provider-pbs.in:my >>>> @persistence_files = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> ./SRC/gt4.2.1-all-source-installer/source-trees/ws-gram/discovery/providers/setup/condor/globus-scheduler-provider-condor.in:my >>>> @persistence_files = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> ./setup/globus/globus-scheduler-provider-fork.in:my @persistence_files >>>> = >>>> glob("~/.globus/persisted/$host-$port/ManagedExecutableJobResourceStateType/*.xml"); >>>> [r...@globus-sge globus-4.2.1]# >>>> [r...@globus-sge globus-4.2.1]# cd /usr/share/tomcat5/webapps/wsrf/ >>>> [r...@globus-sge wsrf]# >>>> [r...@globus-sge wsrf]# grep -r '/.globus/persisted/' . >>>> [r...@globus-sge wsrf]# >>>> [r...@globus-sge wsrf]# >>>> >>>> Has anybody tried to update this before or familiar with changing this? >>>> >>>> Kind regards, >>>> >>>> Dougal >>> >> >> >
