rekado pushed a commit to branch master
in repository guix.
commit 6e396c4bff6c79befdc3e255b7d21c6af1774c5e
Author: Roel Janssen <[email protected]>
AuthorDate: Wed Nov 18 16:47:44 2020 +0100
gnu: Add r-greylistchip.
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 56d8036..d8db2ba 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1657,6 +1657,33 @@ effect sizes for a variety of GLM models, using
approximation of the
posterior for individual coefficients.")
(license license:gpl2)))
+(define-public r-greylistchip
+ (package
+ (name "r-greylistchip")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GreyListChIP" version))
+ (sha256
+ (base32
+ "1d1yvza1aw3vs3di6mrra5l52ig0p9bpzprrqvknjaz5i4yb8ma6"))))
+ (properties `((upstream-name . "GreyListChIP")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-mass" ,r-mass)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/GreyListChIP";)
+ (synopsis "Greylist artefact regions based on ChIP inputs")
+ (description "This package identifies regions of ChIP experiments with high
+signal in the input, that lead to spurious peaks during peak calling.")
+ (license license:artistic2.0)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
