rekado pushed a commit to branch master
in repository guix.
commit a23310ffc24f077dac9c1bd6c93d57791f583b55
Author: Roel Janssen <[email protected]>
AuthorDate: Wed Nov 18 17:24:59 2020 +0100
gnu: Add r-bluster.
* gnu/packages/bioconductor.scm (r-bluster): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce64a30..78ad278 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -72,6 +72,35 @@
database, assembled using data from REACTOME.")
(license license:cc-by4.0)))
+(define-public r-bluster
+ (package
+ (name "r-bluster")
+ (version "1.0.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bluster" version))
+ (sha256
+ (base32
+ "0izrf82m5znyrgai5y5jss4k2brabh4ajxdvnlwwc92l5bw7jp61"))))
+ (properties `((upstream-name . "bluster")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocneighbors" ,r-biocneighbors)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-igraph" ,r-igraph)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/bluster";)
+ (synopsis "Clustering algorithms for Bioconductor")
+ (description"This package wraps common clustering algorithms in an easily
+extended S4 framework. Backends are implemented for hierarchical, k-means
+and graph-based clustering. Several utilities are also provided to compare
+and evaluate clustering results.")
+ (license license:gpl3)))
+
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")
