rekado pushed a commit to branch master
in repository guix.
commit ece564f07dc7398ff9739555708c9bda31262ceb
Author: zimoun <[email protected]>
AuthorDate: Fri Dec 4 04:55:45 2020 +0100
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to
have
a plain directory on the list of libraries to link.
---
gnu/packages/bioconductor.scm | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0989d1b..ce831af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6281,6 +6281,17 @@ for other R packages to compile and link against.")
"19svh32jq1dpq3ayhpd5r8bw0iax8d9kdvpvc23gx2pf16g1j5ag"))))
(properties `((upstream-name . "flowWorkspace")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-linking
+ (lambda _
+ (substitute* "src/Makevars"
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\{h5lib\\}" match)
+ (string-append match "/libhdf5.a")))
+ #t)))))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
