rekado pushed a commit to branch master
in repository guix.
commit 6a4818716d16613d56f0a4c7c8745ae75da8edb6
Author: zimoun <[email protected]>
AuthorDate: Fri Oct 30 16:01:26 2020 +0100
gnu: r-gqtlbase: Update to 1.21.1.
Co-authored-by: Ricardo Wurmus <[email protected]>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
---
gnu/packages/bioinformatics.scm | 14 ++++++++++++--
1 file changed, 12 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 42ebbe7..c758724 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10563,16 +10563,26 @@ interval to data view, mismatch pileup, and several
splicing summaries.")
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
- (version "1.20.4")
+ (version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
- "1ly14vhhqxjpbxjypi6ppd37dycabdhf4ny4nsvp9969k418zv41"))))
+ "0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; This is an upstream bug.
+ (add-after 'unpack 'fix-imports
+ (lambda _
+ (substitute* "NAMESPACE"
+ ((".*maxffmode.*") "")
+ (("importFrom\\(ff,.*") "import(ff)\n"))
+ #t)))))
(propagated-inputs
`(("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
