rekado pushed a commit to branch master
in repository guix.
commit 471ceb5e5e809af3fa398a14cd402480c9c293cd
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Nov 21 07:36:40 2020 +0100
gnu: r-mzr: Fix linking.
* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
---
gnu/packages/bioinformatics.scm | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 788a947..14a9775 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9701,9 +9701,14 @@ proteomics packages.")
(lambda _
(substitute* "src/Makevars"
(("\\./boost/libs.*") "")
- (("ARCH_OBJS=" line)
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\(RHDF5_LIBS\\)" match)
+ (string-append match "/libhdf5.a"))
+ (("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ")
+ (("\\ARCH_OBJS=" line)
(string-append line
- "\nARCH_LIBS=-lboost_system -lboost_regex \
+ "\nBOOST_LIBS=-lboost_system -lboost_regex \
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
#t)))))
(inputs
