apteryx pushed a commit to branch cu/farewell-to-pythonpath in repository guix.
commit 7953d019a29d089e4a5458ff24a081858d7bb7a3 Author: Maxim Cournoyer <[email protected]> AuthorDate: Fri Jan 22 16:25:56 2021 -0500 gnu: python-scanpy: Do not set PYTHONPATH. * gnu/packages/bioinformatics.scm (python-scanpy)[phases] {check}: Do not set PYTHONPATH. --- gnu/packages/bioinformatics.scm | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a1f3287..309a72b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12924,11 +12924,7 @@ in RNA-seq data.") (delete-file "scanpy/tests/test_preprocessing.py") (delete-file "scanpy/tests/test_read_10x.py") - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (getenv "PYTHONPATH"))) - (invoke "pytest") - #t))))) + (invoke "pytest")))))) (propagated-inputs `(("python-anndata" ,python-anndata) ("python-h5py" ,python-h5py)
