raghavgururajan pushed a commit to branch wip-gnome
in repository guix.
commit f66759e0b2410aaa2ad8e74ef5c0aaf728abb6ba
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Wed Aug 25 11:21:42 2021 +0200
gnu: Add ivar.
* gnu/packages/bioinformatics.scm (ivar): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 426926a..e663ff2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14272,6 +14272,32 @@ sequencing (e.g. mapping or base/indel alignment
uncertainty), which are
usually ignored by other methods or only used for filtering.")
(license license:expat)))
+(define-public ivar
+ (package
+ (name "ivar")
+ (version "1.3.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/andersen-lab/ivar";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "044xa0hm3b8fga64csrdx05ih8w7kwmvcdrdrhkg8j11ml4bi4xv"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("htslib" ,htslib)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)))
+ (home-page "https://andersen-lab.github.io/ivar/html/";)
+ (synopsis "Tools for amplicon-based sequencing")
+ (description "iVar is a computational package that contains functions
+broadly useful for viral amplicon-based sequencing. ")
+ (license license:gpl3+)))
+
(define-public python-pyliftover
(package
(name "python-pyliftover")
